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vlf-1
Euk-VirAgrotis_segetum_granulovirus
vlf-1__YP_009513141__Agrotis_segetum_granulovirus__10464
Identity
- Accession:
- YP_009513141 ↗
- Protein ID:
- vlf-1
- Kingdom:
- euk
Quality
78.1
mean pLDDT
Taxonomy
TaxID: 10464
Cluster
View cluster (138 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 11-43_70-172
Domain cluster:
rep: VLF-1__YP_006908609__Epinotia_aporema_granulovirus__166056__D7-38_57-138
D2
medium
residues 173-200_300-357
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2r0qC02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.73 | 41.0 | 4.97e-01 | 91.9% | 87.3% |
| 5jk0B01 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.72 | 57.0 | 4.56e-01 | 86.0% | 98.3% |
| 1a04A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 46.0 | 4.75e-01 | 96.5% | 70.0% |
| 2a3vA02 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.70 | 61.0 | 4.49e-01 | 93.0% | 96.7% |
| 1f44A01 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.70 | 62.0 | 4.75e-01 | 98.8% | 98.5% |
| 1jhfA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 43.0 | 4.78e-01 | 95.3% | 78.3% |
| 4gvpA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.69 | 46.0 | 3.35e-01 | 96.5% | 28.2% |
| 5f64A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 45.0 | 4.88e-01 | 96.5% | 77.3% |
| 2cfxA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 39.0 | 4.79e-01 | 98.8% | 100.0% |
| 4pu7A00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.61 | 36.0 | 3.91e-01 | 88.4% | 69.0% |
| 3zh9B03 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.55 | 45.0 | 3.92e-01 | 100.0% | 59.5% |
| 1g2hA00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.54 | 36.0 | 4.13e-01 | 80.2% | 96.7% |
| 3frwB00 | 1.10.1270.10 | Mainly Alpha › Orthogonal Bundle › Trp Operon Repressor; Chain A › TrpR-like | 0.51 | 44.0 | 4.25e-01 | 100.0% | 84.4% |
| 3tacB01 | 1.10.150.50 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 | 0.51 | 36.0 | 3.19e-01 | 74.4% | 70.9% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4938260 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.84 | 46.0 | 5.56e-01 | 84.9% | 80.0% |
| 5080070 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.80 | 41.0 | 5.09e-01 | 84.9% | 80.0% |
| 3385608 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.76 | 43.0 | 5.11e-01 | 88.4% | 81.7% |
| 4680413 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.74 | 45.0 | 5.14e-01 | 98.8% | 81.5% |
| 5076857 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.70 | 61.0 | 4.79e-01 | 94.2% | 91.4% |
| 4281782 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.68 | 46.0 | 4.97e-01 | 100.0% | 80.0% |
| 5042123 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.67 | 43.0 | 4.60e-01 | 79.1% | 74.7% |
| 4106860 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.61 | 45.0 | 4.37e-01 | 87.2% | 69.5% |
| 144712 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.61 | 47.0 | 4.33e-01 | 87.2% | 64.5% |
| 3385990 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.56 | 45.0 | 4.20e-01 | 87.2% | 69.5% |
| 3919175 | 101.1.1.129 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_4 | 0.54 | 46.0 | 4.23e-01 | 91.9% | 79.1% |
| 4529419 | 101.1.1.11 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_6 | 0.51 | 39.0 | 4.11e-01 | 95.3% | 93.3% |
D3
medium
residues 201-299
Domain cluster:
rep: vlf-1__YP_009506033__Clostera_anastomosis_granulovirus_B__1986290__D203-299