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vp1054

Euk-Vir

Clostera_anastomosis_granulovirus_B

vp1054__YP_009506062__Clostera_anastomosis_granulovirus_B__1986290

Identity

Accession:: YP_009506062 ↗
Protein ID:: vp1054
Kingdom:: euk

Quality

71.6 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Betabaculovirus› Clostera_anastomosis_granulovirus_B

TaxID: 1986290

Cluster

View cluster (46 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 238-344

PDB

Domain cluster: rep: vp1054__YP_009049873__Peridroma_alphabaculovirus__1346829__D218-273_316-331

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05789.17 best	Baculo_VP1054	113.2	2.80e-32	99.1%	30.2%

D2 medium residues 18-105

PDB

Domain cluster: rep: vp1054__YP_009112672__Agrotis_segetum_nucleopolyhedrovirus_B__1580580__D40-103

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05789.17 best	Baculo_VP1054	48.7	1.20e-12	98.9%	24.4%

D3 medium residues 106-136_160-195

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05789.17 best	Baculo_VP1054	58.3	1.40e-15	100.0%	20.1%

CATH (12)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4dimA03	3.30.470.20	Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain	0.67	52.0	3.68e-01	85.1%	40.2%
4r80A00	3.10.450.630	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, ›	0.63	44.0	4.30e-01	74.6%	97.4%
3aeiA00	1.10.287.370	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.60	37.0	3.29e-01	95.5%	43.6%
3a7rA01	3.30.930.10	Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2	0.56	40.0	2.77e-01	76.1%	86.3%
2r7rA04	3.30.70.2480	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.56	43.0	3.32e-01	83.6%	47.8%
1r4wA01	3.40.30.10	Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin	0.53	38.0	2.81e-01	80.6%	32.7%
5awwY00	1.10.3370.10	Mainly Alpha › Orthogonal Bundle › Preprotein translocase SecY subunit › SecY subunit domain	0.52	39.0	2.39e-01	79.1%	32.8%
3td9A02	3.40.50.2300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator	0.52	36.0	2.82e-01	73.1%	68.2%
4b3xA02	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.52	36.0	2.80e-01	76.1%	90.7%
2ej9A01	3.30.930.10	Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2	0.51	44.0	3.26e-01	100.0%	72.3%
3fvcA03	2.30.29.100	Mainly Beta › Roll › PH-domain like ›	0.51	42.0	3.71e-01	98.5%	90.0%
4qarA00	3.40.50.1580	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain	0.50	37.0	2.71e-01	80.6%	98.5%

ECOD (17)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5057036	316.1.1.2 ↗	a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2	0.62	45.0	3.45e-01	76.1%	70.7%
3834362	3832.1.1.2 ↗	alpha bundles › Tumor necrosis factor alpha-induced protein 8-like protein 2 › Tumor necrosis factor alpha-induced protein 8-like protein 2 › Tumor necrosis factor alpha-induced protein 8-like protein 2 › PF25968	0.61	47.0	2.79e-01	83.6%	22.2%
5069373	316.1.1.2 ↗	a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2	0.60	44.0	3.49e-01	77.6%	74.1%
5030443	316.1.1.2 ↗	a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2	0.59	43.0	3.46e-01	77.6%	77.7%
3375055	304.114.1.2 ↗	a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain › POL3_N	0.58	39.0	3.47e-01	70.1%	58.0%
5043316	316.1.1.2 ↗	a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2	0.56	42.0	3.26e-01	80.6%	73.5%
3603043	243.6.1.0 ↗	a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain	0.53	39.0	3.46e-01	77.6%	78.9%
4944896	304.51.1.1 ↗	a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas_Cas6_C	0.53	38.0	3.18e-01	77.6%	68.0%
4955137	2008.1.1.4 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4	0.53	39.0	2.87e-01	77.6%	71.7%
3843668	391.1.2.1 ↗	few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › VWC	0.52	25.0	2.80e-01	85.1%	52.0%
2756576	206.1.3.21 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK	0.51	43.0	3.10e-01	98.5%	56.2%
4944547	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.51	26.0	2.56e-01	76.1%	45.7%
3636564	304.25.1.8 ↗	a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › SGT1	0.51	38.0	2.80e-01	83.6%	95.0%
3900771	330.9.1.0 ↗	a+b two layers › dsRBD-like › C-terminal domain in LINE-1 ORF1p › C-terminal domain in LINE-1 ORF1p	0.50	32.0	3.35e-01	74.6%	71.7%
5077311	211.1.1.1 ↗	a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase	0.50	26.0	2.77e-01	91.0%	50.0%
4480144	129.1.1.2 ↗	alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 3HCDH	0.50	40.0	3.25e-01	89.6%	81.5%
3276121	2485.1.1.0 ↗	a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like	0.50	37.0	3.45e-01	79.1%	80.0%