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vp1054

Euk-Vir

Oxyplax_ochracea_nucleopolyhedrovirus

vp1054__YP_009666608__Oxyplax_ochracea_nucleopolyhedrovirus__2083176

Identity

Accession:
YP_009666608 ↗
Protein ID:
vp1054
Kingdom:
euk

Quality

76.1 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Oxyplax_ochracea_nucleopolyhedrovirus

TaxID: 2083176

Cluster

View cluster (46 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 41-165
PDB
Domain cluster: rep: Capsid_protein,_VP1054__YP_009165649__Perigonia_lusca_single_nucleopolyhedrovirus__1675865__D42-49_61-180_185-192
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05789.17 best Baculo_VP1054 110.3 2.00e-31 100.0% 39.2%
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1xkpB00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.65 42.0 4.34e-01 100.0% 67.8%
4aqzA00 2.60.40.3470 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 37.0 3.58e-01 96.8% 55.1%
5joeA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 36.0 4.13e-01 95.2% 85.9%
2enyA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 36.0 3.92e-01 95.2% 76.0%
2o30A00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 35.0 4.28e-01 93.6% 95.1%
7ahsA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 34.0 4.10e-01 94.4% 91.7%
3tu3A00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.55 37.0 3.85e-01 100.0% 72.3%
3lcyA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 35.0 3.93e-01 94.4% 81.8%
2y23A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 36.0 3.91e-01 96.0% 79.8%
1ry9A00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.54 39.0 3.83e-01 88.0% 68.4%
3encA00 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.54 34.0 4.02e-01 79.2% 98.7%
6h4lA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 35.0 3.96e-01 95.2% 86.5%
5uv6A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 35.0 4.02e-01 94.4% 93.3%
2rikA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 35.0 3.95e-01 94.4% 89.1%
3pucA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 35.0 3.87e-01 95.2% 84.7%
2rikA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 35.0 3.90e-01 95.2% 86.5%
3lcyA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 35.0 3.88e-01 95.2% 86.6%
2wp3O00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 34.0 3.84e-01 95.2% 85.6%
2rikA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 35.0 3.89e-01 95.2% 88.4%
2jllA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 35.0 3.98e-01 95.2% 91.6%
3b43A06 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 34.0 3.85e-01 95.2% 88.4%
2plgA01 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.52 37.0 3.65e-01 88.8% 69.7%
4v2bA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 37.0 3.98e-01 96.0% 86.8%
3u5eU00 3.30.1360.210 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.51 35.0 3.89e-01 84.0% 89.0%
8bxrA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 34.0 3.89e-01 95.2% 90.5%
2wp3T00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 34.0 3.79e-01 95.2% 85.9%
2a38A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 34.0 3.80e-01 96.0% 88.5%
1j5uA01 3.55.10.10 Alpha Beta › 3-Layer(bab) Sandwich › Archease, Possible Chaperone; Chain: A; domain 1 › Archease domain 0.51 29.0 3.05e-01 73.6% 59.0%
4dqlB01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.50 36.0 3.83e-01 92.8% 84.4%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3652778 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.64 57.0 4.15e-01 100.0% 43.9%
3720613 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.63 57.0 4.05e-01 100.0% 40.5%
3915625 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.63 38.0 4.57e-01 94.4% 92.5%
3265117 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 46.0 4.83e-01 95.2% 85.2%
3245886 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 41.0 4.59e-01 95.2% 90.5%
4984971 3501.1.1.0 ↗ a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 0.60 32.0 4.15e-01 77.6% 92.9%
3998667 4014.1.1.1 ↗ a+b two layers › a+b domain in type II DNA topoisomerase › a+b domain in type II DNA topoisomerase › a+b domain in type II DNA topoisomerase › DNA_topoisoIV 0.58 40.0 3.44e-01 90.4% 44.6%
3211551 11.1.1.108 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_2 0.58 42.0 4.54e-01 95.2% 88.6%
3939072 11.1.1.179 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.57 41.0 4.57e-01 95.2% 93.0%
3658706 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.57 32.0 4.10e-01 78.4% 93.3%
3869516 327.11.2.56 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › PF28453 0.56 31.0 4.03e-01 79.2% 100.0%
3243030 11.1.1.178 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_2 0.56 41.0 4.52e-01 95.2% 95.0%
3398135 11.1.1.108 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_2 0.56 38.0 4.18e-01 95.2% 86.0%
1309075 206.1.1.74 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, PK_Tyr_Ser-Thr 0.56 48.0 4.72e-01 100.0% 88.1%
4927137 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.55 35.0 4.04e-01 100.0% 85.3%
3877867 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 37.0 4.19e-01 95.2% 90.5%
3369744 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.55 42.0 4.37e-01 89.6% 86.1%
5050501 3715.1.1.1 ↗ a+b two layers › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal_L22e 0.55 37.0 4.19e-01 91.2% 92.6%
3267141 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 40.0 4.34e-01 93.6% 91.4%
3872071 11.1.1.179 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.53 38.0 4.17e-01 94.4% 89.5%
3405687 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.53 35.0 3.88e-01 95.2% 86.3%
3522480 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.51 34.0 3.54e-01 95.2% 72.2%
3234429 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.51 33.0 3.45e-01 95.2% 69.6%
3935419 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.50 34.0 3.41e-01 95.2% 67.2%
3792687 11.1.1.179 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.50 34.0 3.64e-01 95.2% 81.0%
3531801 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.50 36.0 3.95e-01 85.6% 98.9%
3901157 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.50 35.0 3.95e-01 92.8% 94.7%
D2 medium residues 236-319
PDB
Domain cluster: rep: vp1054__YP_009049873__Peridroma_alphabaculovirus__1346829__D218-273_316-331
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05789.17 best Baculo_VP1054 148.5 5.00e-43 100.0% 25.3%