vp39

Euk-Vir

Clostera_anastomosis_granulovirus_B

vp39__YP_009506023__Clostera_anastomosis_granulovirus_B__1986290

Identity

75.2 mean pLDDT

Naldaviricetes› Lefavirales› Baculoviridae› Betabaculovirus› Clostera_anastomosis_granulovirus_B

TaxID: 1986290

View cluster (46 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 12-94_260-276

PDB

Domain cluster: rep: vp39__YP_010086341__Hyposidra_talaca_nucleopolyhedrovirus__1070315__D23-87

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04501.18 best	Baculo_VP39	110.9	1.10e-31	97.0%	35.2%

D2 medium residues 95-155

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04501.18 best	Baculo_VP39	40.5	3.40e-10	100.0%	22.5%

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1xnfA00	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.64	56.0	3.71e-01	100.0%	23.9%
7y4rB01	1.20.1290.10	Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like	0.62	52.0	4.39e-01	95.1%	61.3%
8g52B01	1.25.40.920	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › TRAP transporter T-component	0.61	48.0	3.28e-01	93.4%	43.0%
1n0uA03	3.90.1430.10	Alpha Beta › Alpha-Beta Complex › Yeast translation eEF2 (G' domain) › Yeast translation eEF2 (G' domain)	0.57	42.0	3.42e-01	80.3%	43.9%
3m03B00	1.10.472.10	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like	0.55	43.0	3.85e-01	90.2%	91.6%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3339599	109.4.1.420 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR	0.74	65.0	4.83e-01	98.4%	47.7%
3801801	109.4.1.1293 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1	0.65	56.0	4.62e-01	96.7%	64.5%
3724820	226.1.1.0 ↗	a+b two layers › POZ domain › POZ domain › POZ domain	0.64	56.0	3.99e-01	98.4%	51.4%
3719915	109.4.1.72 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vps16_C	0.63	54.0	3.56e-01	96.7%	24.7%

D3 medium residues 156-237_277-289

PDB

Domain cluster: rep: VP39__YP_009666419__Lonomia_obliqua_multiple_nucleopolyhedrovirus__134394__D175-245_296-307

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04501.18 best	Baculo_VP39	56.3	4.80e-15	82.1%	32.0%