vp39

Euk-Vir

Trichoplusia_ni_granulovirus_LBIV-12

vp39__YP_009506175__Trichoplusia_ni_granulovirus_LBIV-12__1916701

Identity

72.1 mean pLDDT

Naldaviricetes› Lefavirales› Baculoviridae› Betabaculovirus› Trichoplusia_ni_granulovirus_LBIV-12

TaxID: 1916701

View cluster (46 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 38-92_204-327

PDB

Domain cluster: rep: VP39__YP_009330215__Plodia_interpunctella_granulovirus__262175__D35-89_170-286

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04501.18 best	Baculo_VP39	39.9	5.00e-10	37.4%	23.4%
PF04501.18	Baculo_VP39	46.6	4.60e-12	33.0%	22.5%

D2 medium residues 93-171

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04501.18 best	Baculo_VP39	33.7	4.00e-08	69.6%	16.0%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3i8nB00	3.10.580.10	Alpha Beta › Roll › CBS-domain › CBS-domain	0.53	37.0	3.20e-01	89.9%	45.2%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3639633	108.1.1.0 ↗	alpha arrays › EF-hand › EF-hand-related › EF-hand	0.54	37.0	3.50e-01	72.2%	92.0%
4024908	4267.1.1.0 ↗	a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like	0.51	34.0	3.22e-01	70.9%	98.1%