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vp39

Euk-Vir

Hyposidra_talaca_nucleopolyhedrovirus

vp39__YP_010086341__Hyposidra_talaca_nucleopolyhedrovirus__1070315

Identity

Accession:: YP_010086341 ↗
Protein ID:: vp39
Kingdom:: euk

Quality

70.6 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Hyposidra_talaca_nucleopolyhedrovirus

TaxID: 1070315

Cluster

View cluster (46 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 176-252_275-300

PDB

Domain cluster: rep: VP39__YP_009666419__Lonomia_obliqua_multiple_nucleopolyhedrovirus__134394__D175-245_296-307

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04501.18 best	Baculo_VP39	49.2	7.20e-13	70.9%	27.1%

D2 medium residues 23-87

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04501.18 best	Baculo_VP39	47.4	2.70e-12	100.0%	27.1%

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1repC02	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.53	36.0	3.32e-01	72.3%	98.9%
4bs9A05	3.30.160.660	Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain ›	0.53	36.0	3.11e-01	72.3%	41.2%
2lc4A00	2.30.30.830	Mainly Beta › Roll › SH3 type barrels. ›	0.53	40.0	3.42e-01	83.1%	58.6%
1dt9A01	3.30.960.10	Alpha Beta › 2-Layer Sandwich › Translation, Eukaryotic Peptide Chain Release Factor Subunit 1; Chain A › eRF1 domain 1	0.52	36.0	3.20e-01	75.4%	69.5%
2vw9B00	2.40.50.140	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins	0.51	35.0	2.98e-01	72.3%	96.2%

ECOD (14)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
387703	636.1.1.1 ↗	alpha arrays › SopE-like GEF domain › SopE-like GEF domain › SopE-like GEF domain › IpaB_EvcA	0.64	36.0	2.63e-01	73.8%	18.8%
3322876	7579.1.1.3 ↗	a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S9	0.63	40.0	2.48e-01	84.6%	10.5%
3729338	5051.1.1.10 ↗	alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › AA_permease_2	0.60	42.0	2.49e-01	72.3%	77.0%
3193113	5051.1.1.10 ↗	alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › AA_permease_2	0.59	41.0	2.46e-01	72.3%	82.2%
3633076	1.1.1.30 ↗	beta barrels › cradle loop barrel › RIFT-related › acid protease › PF30863	0.56	39.0	3.37e-01	73.8%	51.4%
4580987	3636.1.1.0 ↗	a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain	0.55	37.0	2.87e-01	70.8%	61.3%
3684661	4099.1.1.1 ↗	a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › MAD	0.55	36.0	2.90e-01	75.4%	30.7%
3194847	3343.1.1.2 ↗	alpha complex topology › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › GCP_C_terminal,GCP_N_terminal	0.53	45.0	2.58e-01	93.8%	27.0%
3414363	3937.1.1.2 ↗	alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin	0.53	39.0	2.46e-01	78.5%	54.9%
3481442	11.1.1.9 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N	0.53	28.0	2.68e-01	75.4%	37.5%
3573769	220.1.1.0 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like	0.53	36.0	2.83e-01	72.3%	68.1%
3512923	223.1.1.0 ↗	a+b three layers › Profilin-like › sensor domains › sensor domains	0.52	36.0	2.80e-01	72.3%	36.4%
3320817	2004.1.1.174 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Elong_Iki1	0.51	34.0	2.28e-01	98.5%	15.5%
185990	3454.1.1.1 ↗	beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like › PilP	0.51	38.0	3.24e-01	83.1%	59.3%

D3 medium residues 88-170

PDB

Domain cluster: rep: VP39__YP_009666419__Lonomia_obliqua_multiple_nucleopolyhedrovirus__134394__D49-56_94-162

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04501.18 best	Baculo_VP39	64.7	1.30e-17	100.0%	34.8%