vp39_capsid

Euk-Vir

Euproctis_pseudoconspersa_nucleopolyhedrovirus

vp39_capsid__YP_002854686__Euproctis_pseudoconspersa_nucleopolyhedrovirus__307467

Identity

72.0 mean pLDDT

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Euproctis_pseudoconspersa_nucleopolyhedrovirus

TaxID: 307467

View cluster (46 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 173-268_287-295

PDB

Domain cluster: rep: VP39__YP_009666419__Lonomia_obliqua_multiple_nucleopolyhedrovirus__134394__D175-245_296-307

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04501.18 best	Baculo_VP39	45.2	1.20e-11	63.8%	22.9%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3o83A00	3.40.50.12780	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain	0.52	38.0	2.58e-01	78.1%	90.5%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3283830	3281.1.2.1 ↗	alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit 8 (Nqo8)-related › NADHdh	0.52	41.0	2.84e-01	85.7%	82.6%

D2 medium residues 16-169_269-286

PDB

Domain cluster: rep: vp39_capsid__NP_613182__Mamestra_configurata_nucleopolyhedrovirus_A__207830__D15-298

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04501.18 best	Baculo_VP39	124.8	5.90e-36	98.3%	66.0%