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vp80

Euk-Vir

Hemileuca_sp._nucleopolyhedrovirus

vp80__YP_008378308__Hemileuca_sp._nucleopolyhedrovirus__1367203

Identity

Accession:
YP_008378308 ↗
Protein ID:
vp80
Kingdom:
euk

Quality

64.4 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Hemileuca_sp._nucleopolyhedrovirus

TaxID: 1367203

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-65_92-165
PDB
Domain cluster: rep: Vp80__YP_006607839__Apocheima_cinerarium_nucleopolyhedrovirus__307461__D1-96
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02338.26 best OTU 36.1 1.20e-08 79.7% 71.1%
D2 high residues 169-234
PDB
D3 high residues 323-380_393-503
PDB
Domain cluster: rep: vp80__YP_009186778__Sucra_jujuba_nucleopolyhedrovirus__1563660__D273-439
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1q5yC00 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.64 33.0 4.50e-01 77.5% 100.0%
2dbbA02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.64 35.0 4.54e-01 99.4% 95.7%
2bj3D02 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.64 32.0 4.36e-01 78.1% 97.5%
4dpoB00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 38.0 4.86e-01 97.6% 100.0%
3kkfA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 37.0 4.60e-01 97.0% 95.2%
1x7vA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 36.0 4.55e-01 95.9% 98.0%
1cc8A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 29.0 4.08e-01 77.5% 100.0%
4zosB00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 36.0 4.59e-01 95.9% 100.0%
3dfeA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 30.0 4.15e-01 80.5% 95.1%
3lnlB02 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 33.0 4.36e-01 95.9% 100.0%
1m1hA01 3.30.70.940 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › NusG, N-terminal domain 0.60 33.0 4.08e-01 78.7% 87.0%
4pcqA02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.60 32.0 4.26e-01 80.5% 100.0%
3onqA02 3.30.70.2730 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 30.0 4.17e-01 79.3% 100.0%
4dn9B00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 34.0 4.29e-01 78.7% 95.9%
2i8eA01 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 28.0 4.01e-01 75.7% 100.0%
4ushA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 30.0 3.80e-01 78.1% 80.6%
2fiuA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 34.0 4.37e-01 78.7% 100.0%
3mtjA03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.59 28.0 3.91e-01 75.1% 97.4%
2dt9A02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.59 30.0 4.01e-01 78.1% 100.0%
1s7hA02 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 30.0 4.05e-01 95.3% 100.0%
1tuwA00 3.30.70.1090 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel. 0.58 36.0 4.29e-01 99.4% 96.2%
3gz7B00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 34.0 4.30e-01 95.9% 100.0%
1zpwX00 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 29.0 4.03e-01 94.7% 98.8%
3lo3A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 32.0 4.18e-01 79.3% 100.0%
1lzwA00 3.30.1390.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L7/L12, C-terminal domain/Adaptor protein ClpS 0.56 29.0 3.83e-01 76.9% 91.2%
3llkA01 1.20.120.1960 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › QSOX sulfhydryl oxidase domain 0.56 29.0 3.78e-01 70.4% 87.8%
2gx8A02 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 32.0 4.06e-01 78.7% 97.0%
5d4nC00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 30.0 3.83e-01 81.1% 91.8%
5ixuA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 32.0 4.02e-01 94.7% 97.1%
1ap8A00 3.30.760.10 Alpha Beta › 2-Layer Sandwich › RNA Cap, Translation Initiation Factor Eif4e › RNA Cap, Translation Initiation Factor Eif4e 0.54 35.0 3.29e-01 97.0% 51.2%
4x0qA03 3.30.70.370 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 32.0 3.44e-01 97.0% 67.1%
2cz4A00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 30.0 3.79e-01 80.5% 92.9%
1r6yA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 33.0 4.05e-01 94.7% 100.0%
1vk3A04 3.30.70.1670 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Formylglycinamide ribonucleotide amidotransferase, C-terminal domain 0.52 30.0 3.82e-01 82.8% 99.0%
4zmuA02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.51 36.0 3.80e-01 97.6% 80.0%
6vxcA01 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.50 41.0 2.72e-01 89.3% 51.8%
7e6gA01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.50 37.0 3.89e-01 97.6% 85.2%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3674181 304.8.1.7 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ALS_ss_C 0.66 30.0 3.85e-01 79.3% 72.0%
5078653 304.8.1.4 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NikR_C 0.63 33.0 4.35e-01 78.7% 96.5%
4955430 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.63 34.0 3.78e-01 82.2% 65.7%
4299576 304.8.1.7 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ALS_ss_C 0.61 29.0 3.89e-01 78.7% 86.7%
4671158 304.6.1.3 ↗ a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE 0.61 37.0 3.11e-01 93.5% 37.4%
3970813 304.12.1.0 ↗ a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 0.61 34.0 4.36e-01 95.9% 96.8%
4929130 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.60 34.0 3.95e-01 81.1% 76.5%
5079325 304.4.1.1 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg 0.60 33.0 4.08e-01 99.4% 87.0%
1562176 304.4.1.4 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM 0.60 37.0 4.54e-01 98.2% 98.1%
4939299 304.24.1.3 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III 0.59 31.0 4.04e-01 97.0% 92.2%
3724729 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.56 38.0 4.23e-01 98.2% 89.2%
4936039 304.51.1.0 ↗ a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related 0.53 34.0 4.13e-01 97.6% 100.0%
3894366 304.8.1.75 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › V_ATPase_I 0.52 30.0 3.46e-01 79.9% 78.3%
5044425 321.2.1.1 ↗ a+b two layers › Glutamine synthetase-like › C-terminal domain in urocanase › C-terminal domain in urocanase › Urocanase_C 0.51 41.0 3.81e-01 85.8% 88.8%
4051573 304.5.1.18 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › PrmA 0.51 30.0 3.77e-01 94.1% 98.0%
D4 high residues 631-816
PDB
Domain cluster: rep: VP80_capsid,_VP87__YP_009666405__Lonomia_obliqua_multiple_nucleopolyhedrovirus__134394__D664-831
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF07267.18 best Nucleo_P87 146.2 2.30e-42 100.0% 28.4%