vp80

Euk-Vir

Catopsilia_pomona_nucleopolyhedrovirus

vp80__YP_009255299__Catopsilia_pomona_nucleopolyhedrovirus__1850906

Identity

63.2 mean pLDDT

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Catopsilia_pomona_nucleopolyhedrovirus

TaxID: 1850906

View cluster (6 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-52

PDB

D2 medium residues 88-189

PDB

D3 medium residues 297-384

PDB

Domain cluster: rep: vp80__YP_009011137__Mamestra_brassicae_multiple_nucleopolyhedrovirus__78219__D138-214

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF07267.18 best	Nucleo_P87	138.2	6.10e-40	100.0%	13.1%

D4 medium residues 409-477

PDB

Domain cluster: rep: vp80__YP_009666567__Oxyplax_ochracea_nucleopolyhedrovirus__2083176__D336-408

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF07267.18 best	Nucleo_P87	58.7	7.00e-16	98.6%	8.5%

D5 medium residues 578-637_763-779

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF07267.18 best	Nucleo_P87	111.6	6.80e-32	79.2%	9.1%

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2vk9A03	1.10.3730.30	Mainly Alpha › Orthogonal Bundle › ProC C-terminal domain-like fold ›	0.53	33.0	3.09e-01	97.4%	50.0%
6ulwA01	3.40.50.12780	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain	0.51	45.0	2.90e-01	98.7%	54.3%
3l09A01	1.20.58.1460	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.51	32.0	3.05e-01	97.4%	50.0%
1cvrA02	3.40.50.1460	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.51	42.0	3.11e-01	97.4%	59.3%

D6 medium residues 638-762

PDB

Domain cluster: rep: VP80_capsid,_VP87__YP_009666405__Lonomia_obliqua_multiple_nucleopolyhedrovirus__134394__D664-831

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF07267.18 best	Nucleo_P87	243.5	8.50e-72	100.0%	18.6%