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vp80

Euk-Vir

Oxyplax_ochracea_nucleopolyhedrovirus

vp80__YP_009666567__Oxyplax_ochracea_nucleopolyhedrovirus__2083176

Identity

Accession:
YP_009666567 ↗
Protein ID:
vp80
Kingdom:
euk

Quality

61.0 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Oxyplax_ochracea_nucleopolyhedrovirus

TaxID: 2083176

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-150
PDB
D2 medium residues 248-332
PDB
Domain cluster: rep: vp80__YP_009011137__Mamestra_brassicae_multiple_nucleopolyhedrovirus__78219__D138-214
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF07267.18 best Nucleo_P87 81.4 9.40e-23 100.0% 12.8%
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3kavA00 1.20.1270.360 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.77 62.0 5.81e-01 85.9% 90.2%
1yo7A00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.73 57.0 5.12e-01 84.7% 90.8%
2ip6A00 1.20.1440.140 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.68 53.0 5.29e-01 84.7% 98.9%
3p42A02 6.10.250.2280 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.68 50.0 5.47e-01 87.1% 95.7%
3f7cA00 1.20.1590.10 Mainly Alpha › Up-down Bundle › YP_001051499.1 fold like › YP_001051499.1 domain like 0.67 55.0 4.24e-01 91.8% 49.7%
3dkqA02 4.10.860.20 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain 0.67 37.0 4.88e-01 84.7% 100.0%
2qqyA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.66 56.0 4.71e-01 90.6% 91.3%
2k19A00 1.20.1440.140 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.66 58.0 5.60e-01 98.8% 92.9%
2vl7A02 1.10.275.30 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › 0.66 51.0 4.77e-01 85.9% 85.5%
2c42A06 3.40.50.970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.65 51.0 3.33e-01 85.9% 23.6%
1f5oA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.64 53.0 4.44e-01 90.6% 91.9%
2rbdA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.64 54.0 4.47e-01 91.8% 87.3%
1dk8A02 1.10.167.10 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 0.63 48.0 4.84e-01 80.0% 83.5%
3di2A00 1.20.1250.50 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.62 49.0 4.46e-01 95.3% 63.5%
4akgA14 1.20.1280.160 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.62 43.0 3.97e-01 80.0% 56.0%
3bt5A00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.61 51.0 4.24e-01 91.8% 91.4%
3ddlA00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.60 48.0 3.49e-01 89.4% 88.1%
3buxB01 1.20.930.20 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Adaptor protein Cbl, N-terminal domain 0.55 46.0 4.00e-01 89.4% 89.1%
2x1dA02 1.10.10.2120 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.55 36.0 3.83e-01 84.7% 77.0%
4lqqB00 1.20.140.30 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › MOB kinase activator 0.55 47.0 4.06e-01 100.0% 86.3%
4qysA02 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 40.0 3.77e-01 77.6% 69.2%
4asvA00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.54 41.0 4.28e-01 83.5% 86.1%
3anwA01 1.20.58.1030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 40.0 3.66e-01 94.1% 60.2%
1ws6A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 42.0 3.39e-01 87.1% 52.0%
1l1lA01 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.52 44.0 2.79e-01 98.8% 52.6%
3eoeD01 3.40.1380.20 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › Pyruvate kinase, C-terminal domain 0.51 41.0 3.64e-01 91.8% 83.9%
1a49A01 3.40.1380.20 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › Pyruvate kinase, C-terminal domain 0.51 44.0 3.58e-01 100.0% 86.9%
3lcvB02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 44.0 3.41e-01 100.0% 53.5%
1bdgA01 3.40.367.20 Alpha Beta › 3-Layer(aba) Sandwich › Hexokinase; domain 1 › 0.50 42.0 2.96e-01 92.9% 84.6%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3810521 633.4.1.1 ↗ alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI 0.77 61.0 5.11e-01 84.7% 82.1%
3478539 3636.1.1.0 ↗ a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain 0.76 61.0 4.60e-01 85.9% 83.6%
3173685 3636.1.1.0 ↗ a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain 0.73 60.0 4.80e-01 87.1% 81.9%
3389507 3817.1.1.1 ↗ alpha bundles › Peroxisomal biogenesis factor 19 › Peroxisomal biogenesis factor 19 › Peroxisomal biogenesis factor 19 › Pex19 0.73 56.0 4.92e-01 80.0% 85.8%
3408432 3636.1.1.0 ↗ a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain 0.72 58.0 4.88e-01 87.1% 80.7%
3517107 174.1.1.0 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.72 57.0 4.63e-01 84.7% 88.1%
3652854 3636.1.1.0 ↗ a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain 0.72 58.0 4.49e-01 85.9% 71.7%
3740479 3636.1.1.0 ↗ a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain 0.72 58.0 4.64e-01 87.1% 84.1%
4385471 3636.1.1.0 ↗ a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain 0.72 57.0 4.70e-01 84.7% 84.0%
5071060 632.15.1.4 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) › HSP70 0.72 50.0 4.85e-01 71.8% 76.8%
3628109 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.72 50.0 3.18e-01 72.9% 78.1%
3420431 632.7.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.71 49.0 4.93e-01 70.6% 77.6%
3580146 3636.1.1.0 ↗ a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain 0.70 58.0 4.62e-01 88.2% 81.8%
3307777 3636.1.1.0 ↗ a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain 0.70 56.0 4.39e-01 87.1% 80.0%
3715999 3817.1.1.1 ↗ alpha bundles › Peroxisomal biogenesis factor 19 › Peroxisomal biogenesis factor 19 › Peroxisomal biogenesis factor 19 › Pex19 0.68 51.0 4.87e-01 80.0% 82.0%
4267913 219.1.1.20 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Acetyltransf_14 0.67 54.0 3.64e-01 85.9% 97.7%
4015034 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.66 49.0 3.47e-01 78.8% 52.6%
None — 0.66 58.0 3.94e-01 95.3% 39.3%
3615716 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.66 51.0 4.58e-01 83.5% 93.3%
3475920 207.1.1.22 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_6 0.66 51.0 3.35e-01 84.7% 24.5%
4628866 109.4.1.1873 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PigN 0.65 57.0 3.95e-01 100.0% 87.3%
3464709 632.15.1.3 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) › GAUT_1 0.64 46.0 4.41e-01 75.3% 77.0%
4982105 632.1.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.64 45.0 4.75e-01 74.1% 97.3%
3338586 632.1.1.12 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › GAUT_1 0.63 48.0 4.71e-01 78.8% 90.0%
3218412 3817.1.1.1 ↗ alpha bundles › Peroxisomal biogenesis factor 19 › Peroxisomal biogenesis factor 19 › Peroxisomal biogenesis factor 19 › Pex19 0.63 52.0 4.48e-01 90.6% 86.7%
3488934 6157.1.1.1 ↗ alpha bundles › GKAP homology domain 1 › GKAP homology domain 1 › GKAP homology domain 1 › GKAP 0.62 50.0 4.32e-01 87.1% 90.8%
3707467 2004.1.1.1 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.61 52.0 3.88e-01 100.0% 80.4%
3277999 5059.1.1.1 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.61 53.0 3.70e-01 97.6% 96.1%
3397472 192.29.1.203 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › IQUB 0.61 45.0 4.13e-01 80.0% 61.7%
3937690 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.61 50.0 3.36e-01 88.2% 83.9%
3853060 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.60 47.0 3.20e-01 88.2% 24.3%
3106880 207.1.1.22 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_6 0.60 47.0 3.21e-01 88.2% 22.0%
3614890 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.59 51.0 3.81e-01 100.0% 78.3%
5012037 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.59 46.0 4.59e-01 84.7% 92.2%
5054648 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.59 47.0 4.63e-01 85.9% 93.3%
4994772 5059.1.1.1 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.58 48.0 3.41e-01 94.1% 92.6%
4465076 3755.4.1.24 ↗ alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › DUF2463 0.57 47.0 3.92e-01 87.1% 65.0%
3774773 3252.2.1.1 ↗ alpha arrays › SHQ1 C-terminal domain-like › Anaphase-promoting complex subunit 5 N-terminal domain › Anaphase-promoting complex subunit 5 N-terminal domain › Apc5_N 0.57 43.0 3.32e-01 80.0% 71.3%
3576601 7518.1.1.0 ↗ a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like 0.55 47.0 4.16e-01 97.6% 86.9%
3231437 2006.1.4.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.53 41.0 3.31e-01 84.7% 94.1%
None — 0.53 40.0 2.82e-01 80.0% 48.1%
4638799 298.4.1.0 ↗ a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E 0.52 40.0 3.51e-01 81.2% 67.2%
3629137 5054.1.1.8 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.52 42.0 3.22e-01 89.4% 51.7%
3186203 5059.1.1.1 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.51 40.0 2.82e-01 87.1% 78.7%
3346182 2004.1.1.135 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PIF1 0.51 43.0 3.48e-01 97.6% 93.9%
3590641 2005.1.1.45 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › DUF218 0.50 40.0 3.27e-01 88.2% 71.8%
D3 medium residues 336-408
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF07267.18 best Nucleo_P87 34.0 2.20e-08 100.0% 10.0%
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2lcqA01 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.72 44.0 3.65e-01 72.6% 35.8%
3d1cA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.65 45.0 3.89e-01 75.3% 45.6%
2bpoA04 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.65 47.0 3.64e-01 76.7% 51.2%
2qi2A03 3.30.1330.30 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 0.64 41.0 3.78e-01 74.0% 50.0%
1j5pA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.63 43.0 3.58e-01 74.0% 39.2%
5vjhB03 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.61 51.0 3.77e-01 98.6% 77.0%
2vf7B01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.60 52.0 3.42e-01 98.6% 24.4%
1xexB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 48.0 3.87e-01 94.5% 65.2%
3guyA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.59 47.0 3.44e-01 89.0% 56.4%
2qffA00 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.58 42.0 4.20e-01 75.3% 86.5%
2wmlA00 3.90.1480.20 Alpha Beta › Alpha-Beta Complex › sialyltransferase cstii, chain A › Glycosyl transferase family 29 0.57 49.0 3.40e-01 100.0% 93.1%
1aepA00 1.20.120.20 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein 0.57 45.0 3.70e-01 91.8% 62.1%
1wz2A04 3.30.2320.20 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › Class I aminoacyl-tRNA synthetases (RS) 0.57 41.0 3.89e-01 76.7% 86.4%
4dwlA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.56 44.0 4.01e-01 93.2% 96.3%
4n03A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.55 41.0 3.17e-01 80.8% 40.3%
7akwA01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.54 42.0 3.16e-01 93.2% 52.7%
1w8iA00 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.53 42.0 3.37e-01 90.4% 41.6%
1yh0A02 3.40.50.1370 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Aspartate/ornithine carbamoyltransferase 0.52 38.0 2.96e-01 78.1% 33.9%
3jc6301 3.30.1640.10 Alpha Beta › 2-Layer Sandwich › mini-chromosome maintenance (MCM) complex, chain A, domain 1 › mini-chromosome maintenance (MCM) complex, chain A, domain 1 0.51 37.0 3.38e-01 78.1% 78.6%
3dc7A00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.51 41.0 3.03e-01 91.8% 35.2%
2wolA02 3.10.105.10 Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 0.51 41.0 2.95e-01 91.8% 48.9%
6zb8A01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.50 37.0 2.48e-01 83.6% 19.4%
3bh0A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 40.0 2.80e-01 91.8% 89.4%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4987795 2006.1.4.12 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_6 0.76 49.0 4.07e-01 75.3% 38.4%
4030109 2006.1.4.12 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_6 0.74 47.0 3.95e-01 74.0% 38.4%
5036539 2006.1.4.12 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_6 0.73 48.0 4.00e-01 74.0% 40.0%
4028944 2006.1.4.11 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PRORP 0.71 52.0 4.12e-01 78.1% 38.6%
4970668 2006.1.4.12 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_6 0.71 48.0 3.96e-01 74.0% 39.2%
5052863 301.1.1.0 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like 0.70 49.0 4.14e-01 74.0% 46.4%
None — 0.70 44.0 3.81e-01 74.0% 41.8%
5056658 2006.1.4.50 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › DUF3368 0.66 47.0 3.37e-01 74.0% 31.0%
3930015 2004.1.1.135 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PIF1 0.61 51.0 3.67e-01 97.3% 67.7%
3316169 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.60 49.0 3.08e-01 91.8% 41.2%
3301440 2004.1.1.135 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PIF1 0.59 51.0 3.71e-01 100.0% 74.5%
3470995 109.4.1.470 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › INTS2 0.58 46.0 2.89e-01 89.0% 24.3%
5063676 2006.1.4.9 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › RNase_Zc3h12a 0.57 43.0 3.69e-01 80.8% 50.8%
3665627 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.57 48.0 3.67e-01 100.0% 41.5%
4133362 632.11.1.6 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like › Yae1_N 0.56 39.0 3.63e-01 74.0% 85.3%
3999097 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.55 47.0 3.67e-01 100.0% 44.0%
3272974 601.7.1.21 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › NICE-3 0.55 39.0 3.60e-01 75.3% 81.0%
3292888 2004.1.1.135 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PIF1 0.55 48.0 3.15e-01 100.0% 44.4%
3381821 2004.1.1.135 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PIF1 0.55 48.0 3.47e-01 100.0% 54.5%
1253201 2007.1.2.13 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_6 0.55 41.0 3.40e-01 80.8% 51.1%
3182665 632.7.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.55 39.0 3.63e-01 76.7% 83.2%
5073108 2004.1.1.119 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Gtr1_RagA 0.54 40.0 3.10e-01 82.2% 81.7%
3379400 2004.1.1.73 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 0.53 43.0 3.21e-01 94.5% 50.2%
3873302 5073.1.1.0 ↗ alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain M 0.53 45.0 2.58e-01 93.2% 85.5%
4970835 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.53 42.0 3.12e-01 90.4% 45.2%
4245801 2495.1.1.1 ↗ a/b three-layered sandwiches › Cell-division inhibitor MinC, N-terminal domain › Cell-division inhibitor MinC, N-terminal domain › Cell-division inhibitor MinC, N-terminal domain › MinC_N 0.52 37.0 3.56e-01 75.3% 69.4%
None — 0.52 43.0 3.37e-01 94.5% 78.1%
3277670 7567.1.1.1 ↗ a/b three-layered sandwiches › LmbE-like › LmbE-like › LmbE-like › PIG-L 0.51 39.0 2.78e-01 84.9% 83.7%
5055958 7510.1.1.1 ↗ a/b three-layered sandwiches › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Iso_dh 0.51 39.0 3.08e-01 84.9% 41.2%
D4 medium residues 602-637_666-719_751-780
PDB
Domain cluster: rep: VP80_capsid,_VP87__YP_009666405__Lonomia_obliqua_multiple_nucleopolyhedrovirus__134394__D664-831
Pfam (3)
AccessionNameScoreE-valueQ covHMM cov
PF07267.18 best Nucleo_P87 99.2 3.90e-28 53.3% 8.9%
PF07267.18 Nucleo_P87 58.1 1.10e-15 31.7% 5.4%
PF07267.18 Nucleo_P87 29.5 4.70e-07 25.8% 4.2%
D5 medium residues 638-665_720-750
PDB
Domain cluster: representative
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF07267.18 best Nucleo_P87 31.0 1.60e-07 54.2% 4.7%
PF07267.18 Nucleo_P87 34.7 1.20e-08 52.5% 4.4%
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2l3lA01 1.20.58.1250 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Tubulin Binding Cofactor C, N-terminal domain 0.73 54.0 4.47e-01 79.7% 76.4%
2rkkA01 1.25.40.270 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Vacuolar protein sorting-associated protein vta1 0.68 47.0 3.44e-01 71.2% 44.9%
2lhrA00 1.20.58.1270 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 50.0 4.60e-01 81.4% 80.8%
4yxtA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.66 45.0 3.28e-01 98.3% 27.6%
2r18A02 1.10.8.880 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Birnavirus VP3 protein, domain 2 0.62 38.0 3.80e-01 86.4% 57.6%
6k93A00 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.62 45.0 2.94e-01 96.6% 18.8%
3o2iA00 3.30.70.2710 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 32.0 2.73e-01 88.1% 28.0%
2l7kA00 1.10.10.1850 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Sporulation protein-like 0.61 36.0 3.29e-01 94.9% 43.4%
3vwaA03 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.60 52.0 3.28e-01 94.9% 24.8%
1vw4L01 3.90.1030.10 Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › Ribosomal protein L17 0.59 44.0 3.34e-01 79.7% 61.5%
1iv8A04 1.10.10.470 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Maltooligosyl trehalose synthase; domain 4 0.57 39.0 3.34e-01 100.0% 44.3%
3bujA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.56 43.0 2.64e-01 84.7% 76.6%
3obfA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.55 43.0 3.01e-01 98.3% 27.8%
3r2qA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.55 43.0 3.58e-01 89.8% 78.8%
8amzP01 1.25.40.570 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.54 38.0 2.35e-01 74.6% 35.7%
4n6cB00 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.54 44.0 3.20e-01 94.9% 96.1%
1g2rA00 3.30.1230.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › YlxR-like 0.53 44.0 3.83e-01 93.2% 88.3%
1lxlA00 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.52 45.0 3.09e-01 100.0% 80.5%
3fghA00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.51 44.0 4.22e-01 96.6% 94.0%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3736510 109.4.1.1240 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF8348 0.72 40.0 3.16e-01 94.9% 27.5%
3996406 604.6.1.0 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.69 48.0 4.55e-01 72.9% 98.6%
3530696 109.4.1.942 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › NOT1_connector 0.67 46.0 3.10e-01 71.2% 34.1%
3204880 109.4.1.934 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_ATR 0.66 42.0 3.33e-01 100.0% 31.2%
3687243 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 41.0 3.91e-01 93.2% 55.7%
3479810 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 47.0 3.28e-01 94.9% 37.1%
3585015 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 33.0 2.83e-01 89.8% 32.6%
3740778 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.54 34.0 3.18e-01 98.3% 50.7%
3189274 608.1.1.1 ↗ alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD 0.53 46.0 3.47e-01 96.6% 47.6%