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vp80_capsid

Euk-Vir

Mamestra_configurata_nucleopolyhedrovirus_A

vp80_capsid__NP_613165__Mamestra_configurata_nucleopolyhedrovirus_A__207830

Identity

Accession:
NP_613165 ↗
Protein ID:
vp80_capsid
Kingdom:
euk

Quality

71.2 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Mamestra_configurata_nucleopolyhedrovirus_A

TaxID: 207830

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-73
PDB
Domain cluster: rep: vp80__YP_009049914__Peridroma_alphabaculovirus__1346829__D3-70
D2 high residues 356-539
PDB
Domain cluster: rep: VP80_capsid,_VP87__YP_009666405__Lonomia_obliqua_multiple_nucleopolyhedrovirus__134394__D664-831
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF07267.18 best Nucleo_P87 129.1 3.40e-37 99.5% 27.8%
D3 medium residues 136-213
PDB
Domain cluster: rep: vp80__YP_009011137__Mamestra_brassicae_multiple_nucleopolyhedrovirus__78219__D138-214
D4 medium residues 217-287
PDB
Domain cluster: rep: vp80__YP_009666567__Oxyplax_ochracea_nucleopolyhedrovirus__2083176__D336-408
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3n98A01 3.20.110.10 Alpha Beta › Alpha-Beta Barrel › 7-stranded beta/alpha barrel › Glycoside hydrolase 38, N terminal domain 0.68 50.0 3.08e-01 78.9% 27.2%
7t7kA01 1.20.930.60 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › 0.62 45.0 3.88e-01 78.9% 96.6%
2mr5A00 3.40.50.11230 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.61 43.0 3.50e-01 74.6% 38.2%
4hyjA00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.60 48.0 3.39e-01 90.1% 88.6%
6ne6A01 1.10.400.10 Mainly Alpha › Orthogonal Bundle › GI Alpha 1, domain 2-like › GI Alpha 1, domain 2-like 0.58 48.0 4.17e-01 94.4% 79.8%
4urjD00 3.30.870.10 Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A 0.57 40.0 3.09e-01 74.6% 32.8%
1aepA00 1.20.120.20 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein 0.56 45.0 3.67e-01 94.4% 61.4%
4fdtB00 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.56 48.0 3.04e-01 100.0% 50.0%
3iwfB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 45.0 4.21e-01 90.1% 70.8%
2ohfA03 1.10.150.300 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Obg-related GTPase Ych/YyaF, coiled-coil domain 0.55 43.0 4.27e-01 93.0% 82.7%
2mx8A01 1.10.274.70 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, N-terminal domain 0.53 43.0 3.84e-01 95.8% 98.2%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4996059 300.1.1.0 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.66 46.0 3.68e-01 74.6% 36.7%
5011373 2004.1.1.342 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_10 0.66 54.0 3.45e-01 93.0% 46.7%
4413129 2004.1.1.342 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_10 0.65 51.0 3.23e-01 90.1% 42.8%
5050104 300.1.1.6 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › Regulator_TrmB 0.63 44.0 3.86e-01 74.6% 47.0%
3930015 2004.1.1.135 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PIF1 0.63 53.0 3.70e-01 93.0% 83.0%
3272285 2003.1.4.9 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › DHS-like NAD/FAD-binding domain › SIR2_2 0.60 47.0 3.13e-01 84.5% 65.9%
4386248 101.1.1.16 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_WhiA 0.60 45.0 4.29e-01 81.7% 75.3%
3513336 2002.1.1.220 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Menorin 0.58 41.0 2.91e-01 76.1% 35.7%
4938609 4952.1.1.1 ↗ alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › Lyase_1 0.57 43.0 3.42e-01 81.7% 74.2%
4169323 4952.1.1.1 ↗ alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › Lyase_1 0.57 44.0 3.58e-01 83.1% 83.7%
3238246 150.1.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.56 45.0 4.03e-01 93.0% 87.3%
3272974 601.7.1.21 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › NICE-3 0.54 40.0 3.58e-01 78.9% 84.0%
5053649 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.53 35.0 3.54e-01 88.7% 68.6%
3229806 6157.1.1.1 ↗ alpha bundles › GKAP homology domain 1 › GKAP homology domain 1 › GKAP homology domain 1 › GKAP 0.52 46.0 3.95e-01 98.6% 89.6%
3728893 206.1.1.55 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › EcKL 0.52 38.0 2.52e-01 81.7% 40.3%
3645234 605.1.1.233 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › PIEZO 0.51 36.0 3.77e-01 76.1% 91.7%
3734113 206.1.1.11 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.51 38.0 2.47e-01 81.7% 86.0%