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vp91-capsid

Euk-Vir

Clostera_anastomosis_granulovirus_Henan

vp91-capsid__YP_008720035__Clostera_anastomosis_granulovirus_Henan__1986291

Identity

Accession:
YP_008720035 ↗
Protein ID:
vp91-capsid
Kingdom:
euk

Quality

70.9 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Betabaculovirus› Clostera_anastomosis_granulovirus_Henan

TaxID: 1986291

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 152-239
PDB
Domain cluster: rep: VP91_capsid__YP_002300581__Adoxophyes_orana_nucleopolyhedrovirus__542343__D153-223
D2 high residues 333-438
PDB
Domain cluster: rep: VP91__YP_009182222__Diatraea_saccharalis_granulovirus__1675862__D255-357
D3 medium residues 11-101
PDB
Domain cluster: rep: viral_capsid_associated_protein_91__YP_667935__Neodiprion_abietis_NPV__204507__D19-97
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF08475.16 best Baculo_VP91_N 76.8 2.50e-21 100.0% 49.0%
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ykdB02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.66 49.0 3.81e-01 76.9% 62.6%
3cjyA00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.58 40.0 2.90e-01 70.3% 54.9%
3u0aA00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.58 40.0 2.88e-01 70.3% 56.2%
3bwsA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 43.0 2.91e-01 78.0% 32.2%
3vgzC00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 42.0 2.86e-01 78.0% 32.2%
1e2rA02 2.140.10.20 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase 0.56 43.0 2.76e-01 81.3% 41.7%
2qe8A00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.56 41.0 2.81e-01 78.0% 35.9%
4o9dA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 41.0 2.67e-01 79.1% 17.9%
5ic7A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 40.0 2.76e-01 78.0% 21.8%
3pr6A00 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.54 42.0 3.64e-01 84.6% 57.9%
3al9A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 39.0 2.46e-01 76.9% 29.2%
3ndaA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.53 39.0 3.51e-01 79.1% 86.4%
4wfvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 37.0 3.22e-01 75.8% 60.1%
3kztA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 40.0 3.56e-01 82.4% 98.5%
2kr0A01 2.30.29.70 Mainly Beta › Roll › PH-domain like › Proteasomal ubiquitin receptor Rpn13/ADRM1 0.52 38.0 3.56e-01 76.9% 68.1%
1yemB00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.51 36.0 2.98e-01 72.5% 73.5%
1lj5A02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.50 38.0 3.22e-01 79.1% 85.1%
6oziB00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.50 37.0 2.84e-01 80.2% 68.0%
2imjD01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 39.0 3.45e-01 85.7% 72.5%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5036626 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.61 45.0 2.92e-01 78.0% 17.6%
3927827 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.58 41.0 2.73e-01 73.6% 30.3%
3870468 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.58 41.0 2.62e-01 73.6% 24.6%
3628642 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 43.0 2.87e-01 79.1% 22.7%
4988344 223.1.1.23 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF_2 0.58 41.0 3.40e-01 75.8% 67.6%
3209159 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 43.0 2.78e-01 78.0% 18.3%
3217717 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.57 43.0 2.74e-01 79.1% 19.3%
3252223 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 42.0 2.79e-01 78.0% 26.7%
3273846 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.56 40.0 2.82e-01 75.8% 29.3%
3214898 5.1.11.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › eIF2A 0.56 41.0 2.61e-01 76.9% 17.7%
None — 0.55 41.0 2.71e-01 78.0% 32.7%
3935989 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 40.0 2.69e-01 76.9% 28.7%
4447482 2484.1.1.11 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ribosomal_L18p 0.55 39.0 3.56e-01 72.5% 87.5%
4599967 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.55 38.0 3.58e-01 72.5% 88.7%
3445096 5.1.3.68 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1618 0.55 46.0 3.07e-01 92.3% 84.7%
4963562 5.1.5.11 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PQQ_2 0.55 41.0 2.72e-01 78.0% 25.1%
3166679 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 38.0 2.57e-01 78.0% 17.6%
3623154 5.1.4.436 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › EMC1_C, PQQ_2, Beta-prop_EMC1_N 0.55 47.0 2.78e-01 96.7% 24.4%
4059727 7502.1.1.0 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.54 38.0 3.17e-01 73.6% 73.9%
3993098 5.1.5.52 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › EMC1_C 0.54 47.0 2.88e-01 96.7% 35.0%
3438347 5.1.5.63 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DUF1618 0.54 40.0 3.51e-01 79.1% 67.1%
3742908 4075.1.1.2 ↗ a+b complex topology › RGC domain › RGC domain › RGC domain › PF29130 0.54 37.0 3.74e-01 72.5% 84.2%
None — 0.53 40.0 2.76e-01 78.0% 32.7%
3473080 5.1.4.329 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30693 0.53 40.0 2.59e-01 80.2% 23.2%
3450557 5.1.3.159 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF7595 0.53 38.0 2.70e-01 76.9% 33.2%
4142499 2484.1.1.11 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ribosomal_L18p 0.53 37.0 3.43e-01 73.6% 83.7%
4012738 708.1.2.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like 0.53 36.0 3.16e-01 70.3% 49.6%
4981443 5.1.11.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed 0.53 39.0 2.58e-01 78.0% 25.3%
3506182 5.1.5.85 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40_RFWD3 0.53 39.0 2.64e-01 79.1% 23.1%
3793797 5.1.5.93 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_EMC1_N 0.53 40.0 2.79e-01 82.4% 38.4%
3467472 5.1.5.146 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_AT5G49610-like 0.52 38.0 2.73e-01 78.0% 36.0%
3178905 708.1.2.6 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › GFA 0.52 37.0 3.09e-01 72.5% 45.9%
3644145 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.52 40.0 2.78e-01 84.6% 89.0%
3520126 5.1.4.329 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30693 0.51 40.0 2.67e-01 84.6% 31.4%
3929330 220.1.1.11 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rpn13_ADRM1_Pru 0.51 38.0 3.40e-01 80.2% 71.5%
3648313 5.1.3.142 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.50 39.0 2.81e-01 87.9% 41.6%
D4 medium residues 439-543
PDB
Domain cluster: rep: P95__YP_009165677__Perigonia_lusca_single_nucleopolyhedrovirus__1675865__D377-533
D5 medium residues 544-631
PDB
Domain cluster: rep: VP91__YP_009182222__Diatraea_saccharalis_granulovirus__1675862__D461-543