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vp91

Euk-Vir

Lambdina_fiscellaria_nucleopolyhedrovirus

vp91__YP_009133271__Lambdina_fiscellaria_nucleopolyhedrovirus__1642929

Identity

Accession:
YP_009133271 ↗
Protein ID:
vp91
Kingdom:
euk

Quality

71.3 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Lambdina_fiscellaria_nucleopolyhedrovirus

TaxID: 1642929

Cluster

View cluster (30 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-101
PDB
Domain cluster: rep: viral_capsid_associated_protein_91__YP_667935__Neodiprion_abietis_NPV__204507__D19-97
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF08475.16 best Baculo_VP91_N 71.4 1.20e-19 98.0% 52.6%
D2 high residues 551-576_764-900
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1kiaA01 3.30.46.10 Alpha Beta › 2-Layer Sandwich › Glycine N-methyltransferase; chain A, domain 1 › Glycine N-methyltransferase, chain A, domain 1 0.59 23.0 3.21e-01 98.8% 69.9%
2rk0A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.52 30.0 3.46e-01 98.2% 76.0%
3ci0J02 2.10.70.20 Mainly Beta › Ribbon › Complement Module; domain 1 › gspk-gspi-gspj complex like domains 0.50 17.0 2.75e-01 84.0% 88.0%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5019514 881.2.1.0 ↗ a+b three layers › Mog1p/PsbP-like › TM1622-like › TM1622-like 0.56 39.0 4.10e-01 100.0% 80.0%
3592989 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.54 29.0 3.50e-01 85.9% 80.0%
D3 medium residues 285-329
PDB
Domain cluster: representative
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ml0B00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.69 47.0 3.81e-01 71.1% 35.6%
2vszB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.67 50.0 3.81e-01 86.7% 51.3%
2z1cB00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 45.0 3.94e-01 84.4% 47.3%
4gnxA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 46.0 3.59e-01 84.4% 34.3%
6oibA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.63 49.0 3.48e-01 88.9% 67.5%
3bzcA05 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 46.0 3.70e-01 84.4% 46.9%
1ci3M02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.61 46.0 4.28e-01 84.4% 75.9%
2a5hA03 6.20.120.40 Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 38.0 3.52e-01 75.6% 45.2%
3dc4A00 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.60 47.0 2.89e-01 88.9% 85.9%
4zi8B01 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.60 40.0 3.09e-01 71.1% 57.0%
2jo6A00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.59 48.0 3.77e-01 100.0% 42.7%
1quqB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 42.0 3.31e-01 84.4% 53.5%
5tkwA02 3.30.420.370 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › GspL cytoplasmic domain, C-terminal subdomain 0.57 48.0 4.30e-01 97.8% 98.5%
2xp1A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.56 44.0 3.72e-01 100.0% 66.3%
2lioA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 38.0 2.76e-01 73.3% 25.7%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.55 42.0 3.62e-01 86.7% 75.3%
5nslA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.55 42.0 2.86e-01 88.9% 68.4%
4phtY02 3.30.420.370 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › GspL cytoplasmic domain, C-terminal subdomain 0.55 44.0 4.11e-01 97.8% 95.2%
3cobC00 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.55 41.0 2.54e-01 88.9% 78.5%
2a6hC05 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.54 40.0 3.53e-01 84.4% 76.0%
3r7wC02 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.54 39.0 3.10e-01 100.0% 34.6%
2khjA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 39.0 3.30e-01 84.4% 50.6%
3h79A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 42.0 3.38e-01 100.0% 86.1%
2b5eA02 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 42.0 3.51e-01 100.0% 83.5%
2ymaA00 3.10.310.60 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.54 43.0 3.25e-01 100.0% 49.6%
2gviA02 3.30.1330.20 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Tubulin/FtsZ, C-terminal domain 0.53 36.0 2.95e-01 73.3% 67.0%
1q57G01 2.20.25.180 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.52 36.0 3.21e-01 73.3% 63.0%
3gkeA01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.52 41.0 3.15e-01 100.0% 42.3%
3ligA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.52 38.0 2.71e-01 86.7% 69.2%
2pbfA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 37.0 2.58e-01 91.1% 20.2%
3hm7B01 2.30.40.10 Mainly Beta › Roll › Urease, subunit C; domain 1 › Urease, subunit C, domain 1 0.51 37.0 3.20e-01 84.4% 50.6%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4343266 394.1.1.1 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.75 64.0 6.27e-01 100.0% 92.0%
3391203 394.1.1.1 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.74 64.0 5.72e-01 100.0% 76.9%
3391195 394.1.1.1 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.74 62.0 5.95e-01 97.8% 84.9%
3405829 394.1.1.0 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins 0.74 64.0 6.02e-01 100.0% 85.5%
3404114 394.1.1.1 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.72 60.0 5.68e-01 100.0% 78.2%
3771732 391.1.2.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.71 51.0 5.30e-01 88.9% 87.5%
3415064 394.1.1.1 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.71 57.0 5.56e-01 93.3% 84.0%
3405821 394.1.1.1 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.69 59.0 5.59e-01 100.0% 83.6%
3231891 394.1.1.0 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins 0.69 56.0 5.61e-01 95.6% 89.4%
3394136 394.1.1.1 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.69 52.0 5.07e-01 84.4% 78.0%
3676806 220.1.1.45 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SCAB-PH 0.69 53.0 3.98e-01 88.9% 54.2%
3413680 394.1.1.0 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins 0.68 58.0 5.60e-01 100.0% 86.0%
3217908 394.1.1.1 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.68 59.0 5.61e-01 100.0% 83.6%
3411438 394.1.1.1 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.68 56.0 5.53e-01 100.0% 92.0%
5017090 318.1.1.0 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 0.67 47.0 4.00e-01 86.7% 43.8%
3511031 394.1.1.1 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.67 55.0 5.15e-01 100.0% 78.3%
3400729 394.1.1.1 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.66 55.0 4.89e-01 100.0% 90.0%
946 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.66 50.0 3.56e-01 86.7% 29.3%
3408503 391.1.2.3 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › SVWC 0.65 50.0 4.19e-01 86.7% 87.1%
3932201 394.1.1.1 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.65 53.0 5.34e-01 100.0% 93.3%
3348430 2003.1.2.63 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › GMC_oxred_N, GMC_oxred_C, NAD_binding_8 0.64 49.0 2.90e-01 84.4% 13.9%
None — 0.64 48.0 2.90e-01 84.4% 48.5%
4041343 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.64 48.0 4.74e-01 84.4% 78.0%
4256153 391.1.1.2 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › VWC 0.64 48.0 4.42e-01 88.9% 90.8%
3521645 391.1.2.11 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › VWC2L_2nd 0.63 48.0 4.43e-01 88.9% 92.2%
4928169 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.63 46.0 4.46e-01 84.4% 77.8%
4646663 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.62 43.0 3.17e-01 84.4% 25.2%
3413141 394.1.1.1 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.62 49.0 4.68e-01 100.0% 78.3%
3389170 391.1.2.3 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › SVWC 0.62 48.0 4.05e-01 91.1% 81.2%
3389987 394.1.1.1 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.61 49.0 4.54e-01 100.0% 72.3%
3538117 391.1.2.17 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › VWC, VWC2L_2nd 0.61 46.0 3.45e-01 86.7% 42.4%
3810757 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.61 48.0 2.75e-01 91.1% 57.3%
4443919 2003.1.10.2 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain › Dala_Dala_lig_N 0.60 43.0 3.25e-01 82.2% 27.7%
3547186 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 46.0 3.42e-01 86.7% 32.8%
3667001 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 46.0 2.68e-01 86.7% 11.8%
3770704 2.1.1.49 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MRP-S35 0.60 43.0 4.03e-01 84.4% 60.0%
3233745 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 43.0 3.49e-01 84.4% 37.9%
4200272 218.1.1.0 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like 0.60 45.0 3.68e-01 86.7% 45.6%
3513810 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 45.0 3.34e-01 88.9% 32.6%
4110113 2003.1.5.4 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT 0.59 43.0 2.79e-01 80.0% 20.8%
4054448 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.59 43.0 3.87e-01 84.4% 68.6%
3485043 267.1.1.3 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.58 43.0 2.79e-01 84.4% 18.4%
5027282 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 48.0 3.75e-01 100.0% 58.3%
3391741 391.1.2.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.58 43.0 2.87e-01 84.4% 27.3%
4077485 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.58 44.0 3.99e-01 86.7% 66.2%
4113274 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 42.0 3.71e-01 84.4% 56.0%
3932206 394.1.1.0 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins 0.57 46.0 4.56e-01 100.0% 95.8%
3685134 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.56 42.0 2.67e-01 86.7% 14.5%
4950893 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.56 44.0 3.95e-01 93.3% 67.1%
4459871 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.56 40.0 3.58e-01 84.4% 74.7%
3768290 391.1.2.11 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › VWC2L_2nd 0.55 41.0 3.88e-01 86.7% 85.0%
5068015 319.1.1.4 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › ArsA_HSP20 0.55 42.0 3.70e-01 88.9% 64.0%
3242288 2008.6.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains 0.54 44.0 3.07e-01 100.0% 28.3%
3391372 394.1.1.1 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.54 44.0 4.21e-01 100.0% 85.5%
4174422 286.1.1.1 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.53 40.0 3.04e-01 88.9% 60.8%
3591236 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 42.0 2.38e-01 100.0% 10.8%
3939983 327.11.2.3 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_6 0.52 37.0 2.91e-01 93.3% 30.4%
4283097 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 40.0 3.42e-01 95.6% 80.0%
5009920 2004.1.1.308 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 0.51 42.0 2.57e-01 97.8% 69.8%
3239004 2003.1.10.3 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain › Synapsin 0.51 37.0 3.07e-01 82.2% 51.6%
D4 medium residues 381-528
PDB
Domain cluster: rep: P95__YP_009165677__Perigonia_lusca_single_nucleopolyhedrovirus__1675865__D377-533