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vp91

Euk-Vir

Drosophila_innubila_nudivirus

vp91__YP_009553156__Drosophila_innubila_nudivirus__2057187

Identity

Accession:: YP_009553156 ↗
Protein ID:: vp91
Kingdom:: euk

Quality

64.3 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Nudiviridae› Alphanudivirus› Drosophila_innubila_nudivirus

TaxID: 2057187

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 31-97

PDB

D2 medium residues 126-269

PDB

Domain cluster: rep: Vp91__YP_010087645__Homarus_gammarus_nudivirus__2509616__D142-261

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01607.30 best	CBM_14	23.2	8.30e-05	31.2%	58.5%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1dqcA00	2.170.140.10	Mainly Beta › Beta Complex › Antimicrobial Protein, Tachycitin; Chain A › Chitin binding domain	0.65	28.0	3.83e-01	71.5%	78.1%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3413679	394.1.1.1 ↗	few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14	0.79	33.0	5.12e-01	79.9%	95.0%
3394116	394.1.1.1 ↗	few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14	0.71	31.0	4.79e-01	72.9%	98.4%
2568928	394.1.1.1 ↗	few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14	0.67	30.0	4.34e-01	84.7%	100.0%

D3 medium residues 299-356

PDB

Domain cluster: representative

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1ymmE01	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.54	46.0	3.76e-01	100.0%	50.4%
7xoiD01	2.60.40.1180	Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II	0.53	45.0	3.75e-01	100.0%	60.7%
2i9yA00	3.30.530.20	Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain	0.51	37.0	2.89e-01	82.8%	84.1%
3wz2B00	3.40.50.10900	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › PAC-like subunit	0.51	40.0	2.89e-01	100.0%	77.6%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3452090	10.2.1.55 ↗	beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › NPL	0.64	46.0	3.85e-01	77.6%	76.2%
5019486	5090.1.1.6 ↗	beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › S-layer	0.60	46.0	3.89e-01	94.8%	55.0%
3227940	2007.1.2.4 ↗	a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor	0.57	47.0	3.19e-01	94.8%	84.3%
3501557	394.1.1.1 ↗	few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14	0.54	33.0	3.48e-01	86.2%	68.0%
4016439	4086.1.1.1 ↗	a+b two layers › AMPKBI-like › AMPKBI-like › AMPKBI-like › AMPKBI	0.53	42.0	3.57e-01	100.0%	51.4%
3937660	2484.1.1.0 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like	0.51	45.0	2.90e-01	100.0%	31.3%
4945884	2011.2.1.7 ↗	a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PAC2	0.51	35.0	2.45e-01	74.1%	57.0%
5054370	2011.2.1.7 ↗	a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PAC2	0.50	38.0	2.71e-01	89.7%	76.7%

D4 medium residues 470-570

PDB

D5 medium residues 571-683

PDB