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zinc-ribbon-containing_protein

Euk-Vir

Marseillevirus_marseillevirus

zinc-ribbon-containing_protein__YP_003407073__Marseillevirus_marseillevirus__694581

Identity

Accession:: YP_003407073 ↗
Protein ID:: zinc-ribbon-containing_protein
Kingdom:: euk

Quality

68.9 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Marseilleviridae› Marseillevirus› Marseillevirus_marseillevirus

TaxID: 694581

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 38-113

PDB

D2 high residues 117-177

PDB

Domain cluster: rep: NC_031022.1__YP_009280252.1__BI056_gp065__00065__D70-126

D3 medium residues 189-263

PDB

Domain cluster: representative

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5cflA02	3.40.50.12100	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Stimulator of interferon genes protein	0.56	40.0	3.25e-01	76.0%	83.0%
3hrgA02	3.30.420.260	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF3822, C-terminal domain	0.56	36.0	3.20e-01	82.7%	43.9%
1gccA00	3.30.730.10	Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › AP2/ERF domain	0.53	39.0	4.14e-01	89.3%	96.8%
2cg7A02	2.10.70.10	Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1	0.52	30.0	3.49e-01	72.0%	90.9%
3iq2A00	3.30.1520.10	Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain	0.52	37.0	3.18e-01	74.7%	83.7%
1uwyA02	2.60.40.1120	Mainly Beta › Sandwich › Immunoglobulin-like › Carboxypeptidase-like, regulatory domain	0.52	36.0	3.33e-01	73.3%	84.5%
2l2fA00	2.30.60.10	Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N	0.51	36.0	3.24e-01	73.3%	93.5%

ECOD (11)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3244742	2484.1.1.200 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH	0.60	42.0	2.82e-01	74.7%	20.0%
4147969	284.1.3.0 ↗	a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain	0.59	43.0	4.16e-01	78.7%	68.2%
5053046	2484.1.1.22 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF99	0.58	44.0	3.32e-01	81.3%	78.4%
3832491	5.1.3.67 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1	0.55	38.0	2.51e-01	70.7%	16.9%
4947958	7502.1.1.0 ↗	a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS	0.55	43.0	3.77e-01	84.0%	67.8%
4331761	2.4.1.2 ↗	beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2	0.54	35.0	3.06e-01	70.7%	42.6%
5011985	2484.2.1.0 ↗	mixed a+b and a/b › Ribonuclease H-like › Methylated DNA-protein cysteine methyltransferase domain › Methylated DNA-protein cysteine methyltransferase domain	0.53	33.0	3.39e-01	73.3%	64.3%
3255015	4099.1.1.0 ↗	a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like	0.52	36.0	3.77e-01	78.7%	80.0%
3282818	2484.1.1.0 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like	0.52	36.0	3.09e-01	72.0%	50.0%
4378664	2484.1.1.0 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like	0.51	42.0	2.95e-01	92.0%	96.2%
3669519	2.1.1.105 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › NMD3_OB	0.50	42.0	3.90e-01	93.3%	82.1%

D4 medium residues 374-426

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF24308.2 best	DUF7487	46.0	8.00e-12	100.0%	22.7%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5010819	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.61	44.0	3.24e-01	79.2%	37.3%

D5 medium residues 427-512

PDB