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zinc-ribbon-containing_protein

Euk-Vir

Anopheles_minimus_iridovirus

zinc-ribbon-containing_protein__YP_009021120__Anopheles_minimus_iridovirus__1465751

Identity

Accession:
YP_009021120 ↗
Protein ID:
zinc-ribbon-containing_protein
Kingdom:
euk

Quality

82.6 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Iridoviridae› Chloriridovirus› Chloriridovirus_anopheles1

TaxID: 1465751

Cluster

View cluster (2 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-62
PDB
Domain cluster: representative
CATH (56)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ab1A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.67 47.0 3.71e-01 74.2% 81.0%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.65 48.0 5.20e-01 80.6% 96.0%
7razA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 50.0 4.56e-01 88.7% 61.2%
2hzpA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.65 54.0 3.99e-01 95.2% 97.7%
5b7sB01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.64 52.0 4.13e-01 91.9% 71.1%
1s68A02 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.64 48.0 4.03e-01 83.9% 61.9%
3h8lA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.64 45.0 3.09e-01 72.6% 49.8%
1evlA02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.62 53.0 4.48e-01 100.0% 80.4%
2ch1A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.62 53.0 4.17e-01 100.0% 71.9%
1qz9A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.61 51.0 3.97e-01 96.8% 65.0%
4wi1A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.61 51.0 4.22e-01 100.0% 73.2%
2fyfA02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.60 53.0 4.48e-01 100.0% 93.3%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 41.0 4.02e-01 72.6% 80.0%
3luuA00 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.60 47.0 4.22e-01 87.1% 93.3%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.59 40.0 4.01e-01 72.6% 74.2%
4hwtA02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.59 50.0 4.24e-01 100.0% 80.0%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.59 41.0 4.58e-01 82.3% 95.8%
5cbeE00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 39.0 3.95e-01 71.0% 68.8%
4q66D01 6.20.120.50 Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 39.0 3.76e-01 71.0% 61.6%
2kcmA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 41.0 3.95e-01 77.4% 78.4%
1whzA00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.57 45.0 4.41e-01 88.7% 91.3%
1vwxA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.57 45.0 4.16e-01 85.5% 91.3%
1k32A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 50.0 3.12e-01 98.4% 45.4%
4qwoB00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.57 47.0 3.74e-01 95.2% 47.7%
3q18A01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.56 47.0 3.83e-01 95.2% 55.8%
3d0fA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 41.0 3.90e-01 77.4% 86.3%
1twuA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.56 43.0 3.48e-01 88.7% 79.6%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 43.0 4.26e-01 88.7% 85.3%
2in5A00 2.40.360.10 Mainly Beta › Beta Barrel › YmcC-like fold › YmcC-like 0.56 42.0 3.02e-01 83.9% 82.1%
1yr1A00 3.40.50.10960 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 45.0 3.77e-01 95.2% 52.1%
2arzA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 41.0 3.16e-01 80.6% 80.0%
3kolA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.55 43.0 3.46e-01 88.7% 87.9%
3rheA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.55 37.0 3.15e-01 71.0% 39.5%
1iwmA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.55 40.0 3.00e-01 95.2% 28.2%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 45.0 4.32e-01 91.9% 100.0%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.54 46.0 3.30e-01 95.2% 42.6%
1zc3B00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 37.0 3.12e-01 71.0% 40.4%
5x68A00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 45.0 2.88e-01 96.8% 89.8%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 38.0 3.75e-01 74.2% 83.3%
3p34A02 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.54 41.0 3.57e-01 82.3% 53.6%
3oyyA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 38.0 3.81e-01 75.8% 80.0%
6vddD01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.54 37.0 2.73e-01 72.6% 30.8%
4hs5A00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.54 43.0 3.84e-01 100.0% 86.7%
4krtB03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 37.0 3.66e-01 72.6% 98.5%
1nr0A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 46.0 3.00e-01 100.0% 22.5%
4py5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.52 40.0 3.91e-01 87.1% 83.3%
4flnA02 3.20.190.20 Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › 0.52 43.0 3.39e-01 100.0% 71.7%
3exmA01 2.40.380.10 Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like 0.52 46.0 3.22e-01 98.4% 68.2%
3e1tA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 44.0 2.98e-01 96.8% 62.2%
1upqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 35.0 3.05e-01 71.0% 45.8%
2dhjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 35.0 2.89e-01 71.0% 37.6%
3oyyB03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 37.0 3.81e-01 75.8% 82.8%
1pieA01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.51 42.0 3.03e-01 98.4% 53.6%
2bddA00 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.51 43.0 3.52e-01 100.0% 59.1%
4hacB01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.50 39.0 2.91e-01 88.7% 37.4%
5hesA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.50 37.0 3.51e-01 83.9% 88.9%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5081654 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.81 64.0 6.53e-01 95.2% 88.3%
5014724 295.1.1.51 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › FtsQ_DivIB_C 0.75 52.0 4.39e-01 88.7% 45.0%
4213616 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.69 56.0 4.90e-01 90.3% 83.2%
4601711 2484.1.1.47 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › T2SSL 0.68 44.0 3.83e-01 75.8% 43.2%
4480998 211.1.1.1 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.68 45.0 3.64e-01 71.0% 35.8%
3290094 211.1.1.1 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.67 45.0 3.53e-01 71.0% 33.1%
3956067 211.1.1.1 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.67 45.0 3.67e-01 71.0% 36.7%
3288724 211.1.1.1 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.65 43.0 3.47e-01 71.0% 34.4%
3701382 312.1.1.8 ↗ a+b three layers › HIT-like › HIT-related › HIT-related › DcpS_C 0.64 50.0 3.34e-01 85.5% 96.9%
4218691 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.64 49.0 4.39e-01 83.9% 81.1%
3286159 211.1.1.11 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase_6 0.64 44.0 4.51e-01 72.6% 75.0%
3839435 330.9.1.0 ↗ a+b two layers › dsRBD-like › C-terminal domain in LINE-1 ORF1p › C-terminal domain in LINE-1 ORF1p 0.64 51.0 4.83e-01 96.8% 73.3%
1874516 211.1.1.1 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.64 44.0 3.53e-01 71.0% 36.7%
4189529 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.64 49.0 4.36e-01 83.9% 81.1%
4150547 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.64 51.0 4.51e-01 90.3% 84.2%
4954234 2004.1.1.195 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD_C 0.64 48.0 3.39e-01 85.5% 55.0%
4940177 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 47.0 4.54e-01 80.6% 75.7%
4981047 7502.1.1.0 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.62 49.0 4.09e-01 90.3% 63.3%
3461127 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.61 49.0 4.54e-01 88.7% 85.0%
3401140 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.61 50.0 3.01e-01 91.9% 18.9%
4947158 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.61 48.0 3.30e-01 87.1% 29.1%
3416297 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.61 49.0 4.16e-01 91.9% 75.5%
3967370 620.1.1.2 ↗ alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › DinB 0.61 42.0 3.12e-01 72.6% 52.5%
3669346 331.23.1.0 ↗ a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.61 47.0 4.39e-01 85.5% 86.1%
4451770 4237.1.1.1 ↗ beta barrels › FomD-like › FomD-like › FomD-like › DUF402 0.61 45.0 3.36e-01 80.6% 63.6%
4110542 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.60 50.0 4.20e-01 93.5% 71.8%
4977294 3016.1.1.3 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_5 0.60 51.0 4.32e-01 96.8% 100.0%
4475219 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.60 47.0 3.84e-01 91.9% 59.2%
3942661 620.1.1.2 ↗ alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › DinB 0.60 43.0 3.23e-01 77.4% 52.3%
4983539 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.59 47.0 3.11e-01 87.1% 27.7%
4564786 6020.1.1.1 ↗ a+b two layers › Beta domain of DivIB/FtsQ › Beta domain of DivIB/FtsQ › Beta domain of DivIB/FtsQ › FtsQ_DivIB_C 0.59 50.0 4.04e-01 100.0% 71.5%
3957069 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.59 42.0 3.12e-01 75.8% 58.7%
3687406 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.59 48.0 4.36e-01 90.3% 95.2%
3953524 378.1.1.23 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › DUF222 0.58 41.0 3.12e-01 75.8% 60.6%
4992411 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.58 45.0 3.34e-01 87.1% 34.7%
3593467 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 45.0 2.81e-01 87.1% 39.5%
3939496 5.1.4.500 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sec39 0.58 47.0 2.69e-01 100.0% 8.1%
3607693 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 50.0 3.20e-01 100.0% 26.9%
3515117 2004.1.1.73 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 0.57 46.0 3.22e-01 90.3% 73.3%
3720891 211.1.1.1 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.57 43.0 4.04e-01 85.5% 72.5%
3425820 7579.1.1.44 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_6 0.57 50.0 3.16e-01 100.0% 41.2%
3944822 211.1.1.23 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › YycE-like_C 0.56 37.0 3.73e-01 72.6% 66.2%
4311778 211.1.1.56 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase, YycE-like_N, YycE-like_C 0.56 45.0 3.58e-01 90.3% 82.2%
3601275 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 44.0 2.68e-01 87.1% 24.2%
3265670 5.1.4.56 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › NUP214 0.56 42.0 2.68e-01 100.0% 14.3%
3283725 330.10.1.0 ↗ a+b two layers › dsRBD-like › Heterocyclase TruD C-terminal domain › Heterocyclase TruD C-terminal domain 0.55 47.0 4.19e-01 96.8% 76.7%
3373766 7.1.1.7 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_3 0.55 40.0 3.12e-01 79.0% 79.3%
3314588 2485.1.1.43 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_6 0.55 46.0 3.87e-01 100.0% 67.5%
5084004 212.1.1.0 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.55 40.0 2.88e-01 79.0% 72.8%
3487549 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.55 47.0 2.63e-01 100.0% 25.2%
7384 219.1.1.21 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C58 0.54 46.0 3.30e-01 95.2% 42.6%
2546576 3740.1.1.1 ↗ alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_N,FrhB_FdhB_C 0.54 42.0 2.79e-01 88.7% 73.5%
3496646 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.54 46.0 2.95e-01 100.0% 29.7%
5704 211.1.1.23 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › YycE-like_C 0.53 35.0 3.50e-01 72.6% 64.2%
3410605 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.53 46.0 2.93e-01 100.0% 24.4%
4949942 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 39.0 3.51e-01 80.6% 76.1%
3992587 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.53 46.0 2.67e-01 100.0% 23.1%
3588456 298.1.1.24 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.52 44.0 3.39e-01 100.0% 57.4%
3500438 5.1.4.277 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_EIPR1 0.52 45.0 3.10e-01 100.0% 30.8%
3595783 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.52 44.0 2.64e-01 98.4% 19.4%
4928178 1.1.9.6 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › UPF0113 0.52 40.0 3.06e-01 90.3% 45.3%
3599435 5.1.4.16 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A 0.51 44.0 2.74e-01 98.4% 32.1%
3429120 212.1.1.3 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N 0.51 40.0 2.82e-01 87.1% 31.4%
3388849 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 35.0 2.83e-01 75.8% 82.1%
3195324 212.1.1.4 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N,GalKase_gal_bdg 0.50 43.0 2.93e-01 100.0% 54.5%
3515806 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.50 34.0 2.78e-01 72.6% 37.0%
4127270 71.1.1.3 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.50 41.0 3.03e-01 93.5% 43.7%
D2 high residues 375-515
PDB
Domain cluster: rep: MutH_Vsr_archaeal_HJR-like_endonuclease__YP_009238811__Brazilian_marseillevirus__1813599__D247-402
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF24308.2 best DUF7487 147.8 6.00e-43 79.4% 47.3%
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1a79A01 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.73 50.0 5.89e-01 94.3% 98.0%
2dbsA00 3.40.1350.20 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.63 35.0 4.47e-01 95.0% 96.2%
2m9mA00 3.40.50.10130 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.60 39.0 3.96e-01 99.3% 65.5%
1xmxA02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.58 44.0 4.34e-01 86.5% 73.8%
2a1iA01 3.40.50.10130 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.58 39.0 4.21e-01 90.8% 82.1%
1vx7000 2.30.170.20 Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L24 0.54 25.0 3.58e-01 78.7% 96.8%
1odfA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 41.0 3.29e-01 80.1% 88.2%
3d6wB02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.52 14.0 2.68e-01 83.7% 82.1%
3dlaB01 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.52 45.0 3.48e-01 95.7% 61.5%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2142345 2008.2.1.1 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo 0.76 48.0 5.84e-01 92.9% 95.7%
4997775 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.72 48.0 5.35e-01 86.5% 85.5%
4930748 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.70 57.0 5.04e-01 85.1% 74.9%
3274249 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.62 51.0 4.39e-01 95.0% 56.3%
3195800 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.61 46.0 4.21e-01 78.0% 65.9%
3218472 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.61 29.0 3.08e-01 90.8% 49.6%
3729142 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.60 56.0 4.46e-01 100.0% 64.2%
3210459 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.60 50.0 4.66e-01 95.0% 71.1%
3725381 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.60 56.0 4.53e-01 100.0% 61.6%
3977422 246.1.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase › CN_hydrolase 0.59 43.0 3.72e-01 98.6% 48.2%
3203106 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.59 55.0 4.49e-01 100.0% 62.0%
3725796 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.59 55.0 4.34e-01 100.0% 75.6%
3689206 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.59 52.0 5.14e-01 94.3% 91.3%
3727039 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.59 54.0 4.33e-01 100.0% 62.6%
3728231 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.59 54.0 4.37e-01 100.0% 61.1%
3217738 2008.1.1.12 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Rad10 0.58 38.0 3.88e-01 98.6% 66.4%
3733745 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.58 52.0 4.56e-01 95.0% 67.5%
4981147 2008.1.1.3 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc 0.58 46.0 4.39e-01 83.7% 81.8%
3198801 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.58 41.0 3.91e-01 74.5% 61.8%
3280439 2008.1.1.20 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Uma2 0.57 53.0 4.84e-01 100.0% 80.4%
369229 3535.1.1.1 ↗ a+b two layers › Sex pheromone staph-cAM373 › Sex pheromone staph-cAM373 › Sex pheromone staph-cAM373 › CamS 0.57 40.0 4.28e-01 72.3% 95.0%
3919472 2006.1.6.13 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_3 0.56 43.0 4.00e-01 81.6% 92.8%
5049071 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.56 45.0 4.37e-01 95.7% 76.9%
1030945 2008.1.1.34 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Card1_endonuc 0.55 42.0 4.30e-01 83.7% 82.2%
3508213 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.54 47.0 4.38e-01 95.0% 90.0%
5025232 246.1.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase › CN_hydrolase 0.54 47.0 4.09e-01 93.6% 78.6%
3427464 2007.1.2.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.53 44.0 4.61e-01 99.3% 99.2%
3961432 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.53 42.0 4.07e-01 83.7% 78.1%
4094488 1137.1.1.0 ↗ a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain 0.51 38.0 3.89e-01 93.6% 78.6%
2469837 3148.1.1.2 ↗ a+b two layers › putative secreted protein PA3611 › putative secreted protein PA3611 › putative secreted protein PA3611 › T2SSS_2 0.51 34.0 3.86e-01 70.2% 88.2%
D3 medium residues 65-114
PDB
Domain cluster: representative
CATH (77)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.82 59.0 6.12e-01 76.0% 100.0%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.79 58.0 5.72e-01 78.0% 90.4%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.77 56.0 5.30e-01 78.0% 93.3%
3goxA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 58.0 5.76e-01 84.0% 96.1%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.74 55.0 5.69e-01 78.0% 97.8%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.74 57.0 4.89e-01 84.0% 69.6%
4fw1A02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.73 53.0 5.19e-01 78.0% 83.3%
2kxcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 53.0 4.80e-01 78.0% 86.6%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 56.0 5.16e-01 84.0% 85.9%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 56.0 5.32e-01 84.0% 93.2%
1zuuA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 50.0 4.83e-01 74.0% 98.2%
2evrA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 52.0 4.59e-01 80.0% 86.5%
4ytlA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 55.0 5.56e-01 88.0% 96.0%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 55.0 4.87e-01 88.0% 65.8%
1igqB00 2.30.30.150 Mainly Beta › Roll › SH3 type barrels. › KorB, C-terminal domain 0.69 53.0 5.14e-01 84.0% 78.9%
2yrvA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 57.0 4.35e-01 92.0% 54.0%
2do3A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 53.0 5.31e-01 86.0% 92.2%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 54.0 5.24e-01 90.0% 93.0%
3d5pA00 3.40.1580.10 Alpha Beta › 3-Layer(aba) Sandwich › SMI1/KNR4-like › SMI1/KNR4-like 0.67 53.0 3.99e-01 92.0% 36.1%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 58.0 5.47e-01 100.0% 91.5%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.64 48.0 4.86e-01 84.0% 96.1%
3k30A03 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.64 49.0 3.68e-01 86.0% 94.7%
6l6jA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.64 49.0 3.66e-01 86.0% 92.6%
3netB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.64 51.0 4.26e-01 94.0% 76.5%
2eqkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 56.0 4.98e-01 100.0% 72.6%
2pagA00 3.40.1580.10 Alpha Beta › 3-Layer(aba) Sandwich › SMI1/KNR4-like › SMI1/KNR4-like 0.63 52.0 3.85e-01 92.0% 35.6%
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 54.0 5.05e-01 100.0% 82.5%
4wi1A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.62 50.0 3.90e-01 96.0% 64.2%
1nj1A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.61 49.0 4.04e-01 96.0% 74.0%
5xilA02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.61 49.0 3.80e-01 96.0% 64.8%
2qmiA02 2.40.128.210 Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain 0.61 51.0 4.13e-01 96.0% 88.0%
2i4lB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.61 49.0 4.06e-01 96.0% 77.2%
1httA02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.61 49.0 4.11e-01 96.0% 79.6%
3a7rA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.61 51.0 3.35e-01 100.0% 45.6%
1qe0A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.60 49.0 4.16e-01 96.0% 84.6%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.60 51.0 4.68e-01 100.0% 91.0%
1fl2A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 49.0 3.74e-01 94.0% 86.3%
3f8dA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 47.0 3.67e-01 92.0% 85.4%
4xcmA02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.60 50.0 3.81e-01 96.0% 42.3%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 50.0 4.16e-01 100.0% 58.3%
4bs9A02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.59 43.0 2.96e-01 82.0% 76.1%
1t82A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.59 45.0 3.38e-01 88.0% 84.5%
6bogA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 49.0 4.92e-01 100.0% 96.2%
1xfdA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.58 47.0 2.82e-01 96.0% 36.9%
1f1sA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.57 44.0 3.92e-01 92.0% 90.2%
1lc5A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.57 47.0 3.65e-01 100.0% 62.4%
3hdoA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.57 46.0 3.60e-01 100.0% 59.2%
1whzA00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.57 38.0 3.47e-01 70.0% 53.6%
5g56A03 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.56 39.0 3.10e-01 78.0% 99.2%
4wbtA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.56 48.0 3.53e-01 100.0% 66.0%
3p1tA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.55 47.0 3.58e-01 98.0% 82.0%
3t4nA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.55 46.0 3.87e-01 100.0% 89.6%
3lmbA01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.55 44.0 3.25e-01 94.0% 51.0%
1sbkA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.55 42.0 3.34e-01 96.0% 83.2%
3m2oA01 3.30.720.120 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.55 40.0 3.99e-01 92.0% 75.5%
3sk1C01 3.30.720.120 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.55 40.0 3.92e-01 94.0% 74.1%
2czrA01 3.40.1350.70 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › TBP-interacting protein, N-terminal domain 0.54 43.0 3.50e-01 94.0% 88.7%
3a2bA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.54 47.0 3.48e-01 100.0% 82.6%
4m0hA01 2.60.120.1440 Mainly Beta › Sandwich › Jelly Rolls › 0.54 42.0 3.24e-01 96.0% 59.0%
2vnuD04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 45.0 3.97e-01 100.0% 88.6%
4rbnA01 3.10.450.330 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 41.0 3.20e-01 92.0% 56.6%
4huzA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.53 42.0 3.05e-01 90.0% 84.8%
5ff5A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.53 40.0 2.71e-01 90.0% 41.5%
4qb5D00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.53 45.0 3.46e-01 100.0% 48.8%
4z04A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.53 43.0 3.39e-01 100.0% 88.7%
1ul7A00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.53 43.0 3.60e-01 100.0% 82.4%
2jrbA00 3.30.250.20 Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › L1 transposable element, C-terminal domain 0.53 43.0 4.02e-01 96.0% 96.9%
3getA02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.53 43.0 3.60e-01 96.0% 86.2%
3havA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 42.0 3.56e-01 90.0% 92.1%
2v8qA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.52 42.0 3.68e-01 100.0% 93.3%
5c68A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.52 43.0 3.39e-01 94.0% 96.3%
3ly1D01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.52 43.0 3.34e-01 100.0% 69.8%
2ymsA00 2.40.128.630 Mainly Beta › Beta Barrel › Lipocalin › 0.51 39.0 3.17e-01 96.0% 87.1%
2kjzA01 3.30.720.120 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.51 36.0 3.59e-01 94.0% 74.1%
1cb8A03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.51 40.0 3.21e-01 92.0% 71.8%
4a2aA04 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.51 41.0 3.86e-01 96.0% 93.8%
2rbcA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.50 41.0 2.58e-01 96.0% 75.8%
ECOD (85)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
None — 0.81 60.0 3.22e-01 78.0% 5.3%
3765126 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.81 58.0 5.63e-01 76.0% 98.2%
3938389 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.77 59.0 4.88e-01 82.0% 60.0%
3840679 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.77 58.0 4.67e-01 82.0% 52.6%
3469800 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.76 55.0 4.65e-01 76.0% 66.3%
3586487 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 61.0 5.07e-01 88.0% 58.8%
3923813 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 60.0 5.47e-01 88.0% 92.3%
3913334 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 60.0 5.33e-01 88.0% 72.9%
3230083 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.74 59.0 4.86e-01 88.0% 54.4%
4002896 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.74 60.0 4.88e-01 88.0% 54.4%
3576438 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 59.0 4.85e-01 88.0% 57.8%
3218198 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 59.0 5.77e-01 88.0% 90.9%
1114686 4.1.1.8 ↗ beta barrels › SH3 › SH3 › SH3 › IN_DBD_C 0.73 53.0 5.14e-01 78.0% 82.1%
4890270 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.73 55.0 5.41e-01 82.0% 87.0%
3482646 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 56.0 3.68e-01 84.0% 27.5%
4317035 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.73 58.0 4.85e-01 88.0% 60.0%
3474715 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 55.0 5.03e-01 84.0% 70.8%
4950396 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 61.0 5.93e-01 98.0% 87.3%
3407854 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.70 55.0 4.50e-01 88.0% 51.6%
3881123 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.69 55.0 4.65e-01 88.0% 56.5%
3765274 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 54.0 4.50e-01 88.0% 58.9%
4994957 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 54.0 5.27e-01 88.0% 83.6%
3617111 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.69 51.0 4.25e-01 82.0% 52.2%
3671986 4.1.1.238 ↗ beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 0.68 61.0 5.46e-01 100.0% 72.9%
3881117 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.68 54.0 4.32e-01 88.0% 54.0%
3547106 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.68 54.0 4.46e-01 88.0% 58.9%
3576128 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 53.0 4.14e-01 88.0% 47.8%
4952887 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 54.0 5.25e-01 88.0% 85.5%
5033075 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 59.0 5.72e-01 100.0% 89.1%
3267329 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 59.0 4.42e-01 100.0% 48.8%
3336463 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.67 47.0 4.04e-01 74.0% 46.2%
5078789 4333.1.1.8 ↗ a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain › N6_Mtase 0.67 46.0 2.63e-01 74.0% 9.6%
3920666 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.67 59.0 4.84e-01 100.0% 58.9%
5001065 4333.1.1.0 ↗ a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain 0.66 46.0 2.82e-01 74.0% 17.8%
4011604 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.66 58.0 5.06e-01 100.0% 81.3%
3570399 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 51.0 4.78e-01 88.0% 95.4%
3597793 5094.1.1.0 ↗ a+b duplicates or obligate multimers › OmpH-like › OmpH-like › OmpH-like 0.66 53.0 4.04e-01 98.0% 47.4%
4999847 4333.1.1.0 ↗ a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain 0.65 46.0 2.83e-01 74.0% 20.6%
3261235 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.65 51.0 4.35e-01 88.0% 62.4%
4947995 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 56.0 5.46e-01 98.0% 87.3%
3389169 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.65 57.0 4.82e-01 100.0% 61.2%
5065152 4333.1.1.0 ↗ a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain 0.65 45.0 2.80e-01 74.0% 18.4%
3240406 4.1.1.347 ↗ beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5, KOW6_SPT5 0.65 57.0 4.36e-01 100.0% 47.0%
4015071 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 56.0 5.08e-01 100.0% 82.9%
4946165 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 56.0 5.47e-01 100.0% 90.9%
4997767 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 50.0 5.25e-01 88.0% 100.0%
4932368 2005.1.1.17 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1f 0.64 56.0 3.57e-01 100.0% 26.4%
5025079 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 57.0 5.57e-01 100.0% 90.9%
3616382 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.63 49.0 4.76e-01 94.0% 100.0%
4962256 101.1.2.937 ↗ alpha arrays › HTH › HTH › winged helix domain › PF25943 0.63 54.0 4.26e-01 100.0% 73.6%
3669494 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.63 55.0 3.94e-01 100.0% 44.0%
5040416 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 48.0 4.90e-01 88.0% 94.0%
3914746 4.1.1.128 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_4 0.62 54.0 4.89e-01 100.0% 75.7%
3928987 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 54.0 4.66e-01 100.0% 77.5%
4477176 7502.1.1.0 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.62 48.0 4.24e-01 94.0% 83.5%
4886650 7502.1.1.0 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.62 48.0 4.24e-01 94.0% 83.5%
3829548 331.4.1.2 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › NAF 0.61 52.0 3.94e-01 100.0% 59.2%
4589595 4.1.1.447 ↗ beta barrels › SH3 › SH3 › SH3 › PF28065 0.61 51.0 4.81e-01 100.0% 95.4%
3283015 211.1.1.1 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.59 43.0 3.29e-01 76.0% 86.7%
4010184 2003.1.2.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox 0.59 48.0 3.62e-01 92.0% 95.2%
3496312 211.1.1.17 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › GLOD4_C 0.59 40.0 3.92e-01 70.0% 63.6%
3280391 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.58 40.0 3.62e-01 72.0% 54.3%
3708114 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.58 47.0 3.86e-01 100.0% 75.2%
3516806 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.57 47.0 3.03e-01 100.0% 28.6%
3529448 331.4.1.1 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › KA1 0.57 46.0 3.87e-01 100.0% 82.0%
3604264 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 46.0 3.86e-01 100.0% 79.0%
3992359 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.56 46.0 3.82e-01 100.0% 78.0%
3677415 331.4.1.2 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › NAF 0.56 46.0 3.61e-01 100.0% 67.5%
6339 331.4.1.3 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › AdenylateSensor 0.55 47.0 3.54e-01 100.0% 59.4%
3391086 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.55 47.0 2.73e-01 100.0% 38.0%
3487063 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.55 46.0 3.85e-01 100.0% 85.6%
3243842 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 41.0 3.31e-01 86.0% 77.3%
3830573 331.4.1.1 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › KA1 0.54 44.0 3.56e-01 100.0% 83.3%
4032137 211.1.1.1 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.54 39.0 3.76e-01 92.0% 66.7%
4950203 331.4.1.35 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › PF27341 0.54 48.0 3.10e-01 100.0% 45.5%
5051779 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.53 42.0 3.51e-01 100.0% 88.2%
3612587 4357.1.1.0 ↗ beta barrels › WWE domain › WWE domain › WWE domain 0.53 40.0 3.85e-01 92.0% 71.7%
3262446 331.4.1.1 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › KA1 0.53 44.0 3.70e-01 100.0% 84.9%
3963015 211.1.1.1 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.52 43.0 3.15e-01 94.0% 80.7%
5004871 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.52 42.0 3.59e-01 96.0% 87.8%
3913070 331.4.1.3 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › AdenylateSensor 0.51 41.0 3.59e-01 100.0% 89.8%
431522 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.51 37.0 3.20e-01 84.0% 46.2%
5000990 241.1.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone 0.51 40.0 3.04e-01 100.0% 73.5%
3823427 331.4.1.2 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › NAF 0.51 40.0 3.22e-01 100.0% 55.2%
3479080 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.50 42.0 3.60e-01 100.0% 94.3%
D4 medium residues 133-203
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2uz8A01 3.40.30.90 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › 0.60 42.0 4.57e-01 84.5% 98.1%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 41.0 4.22e-01 70.4% 78.8%
3pg1A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.60 47.0 3.95e-01 88.7% 100.0%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 40.0 4.13e-01 70.4% 79.4%
3we5A00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.58 45.0 3.74e-01 90.1% 83.0%
1iwmA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.56 41.0 3.03e-01 77.5% 42.9%
3udcA02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.55 35.0 3.96e-01 70.4% 88.0%
4c5wA01 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.55 37.0 3.42e-01 71.8% 93.8%
3e5zA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.54 40.0 2.72e-01 80.3% 31.7%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.54 35.0 3.96e-01 70.4% 90.0%
3udfA03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 39.0 3.58e-01 77.5% 91.6%
3brnB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 40.0 3.22e-01 83.1% 89.2%
4oonA03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 38.0 3.38e-01 76.1% 91.3%
2ogqA01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.53 39.0 3.34e-01 81.7% 84.9%
2qc5A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 39.0 2.65e-01 81.7% 25.2%
1d3bC00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.52 36.0 3.66e-01 71.8% 90.1%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.52 36.0 3.57e-01 73.2% 87.0%
3dydA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.52 38.0 3.16e-01 80.3% 87.6%
3dzzA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.52 41.0 3.34e-01 88.7% 66.9%
2kafA00 3.40.30.150 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Coronavirus polyprotein cleavage domain 0.52 36.0 3.74e-01 76.1% 98.5%
4k7zA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 37.0 2.66e-01 76.1% 92.4%
7xinA03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.51 39.0 3.45e-01 83.1% 86.2%
4wh5A00 3.30.460.40 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.51 42.0 3.31e-01 93.0% 84.8%
5vyeA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.51 37.0 3.33e-01 78.9% 97.1%
3cbfA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.50 41.0 3.19e-01 94.4% 57.1%
3h27A00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.50 37.0 2.38e-01 83.1% 99.3%
2xp1A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.50 41.0 3.81e-01 95.8% 100.0%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5081654 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.76 61.0 6.56e-01 91.5% 100.0%
3993250 4.1.1.333 ↗ beta barrels › SH3 › SH3 › SH3 › PF29330 0.63 41.0 4.64e-01 70.4% 87.3%
3621818 4.1.1.333 ↗ beta barrels › SH3 › SH3 › SH3 › PF29330 0.63 41.0 4.83e-01 70.4% 96.0%
3868320 4.1.1.65 ↗ beta barrels › SH3 › SH3 › SH3 › 53-BP1_Tudor 0.61 41.0 4.25e-01 70.4% 75.4%
3855972 4.1.1.253 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4537 0.60 41.0 4.28e-01 70.4% 76.9%
4003717 4.1.1.50 ↗ beta barrels › SH3 › SH3 › SH3 › MIB_HERC2 0.60 41.0 4.02e-01 70.4% 78.7%
3494765 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.60 41.0 2.85e-01 70.4% 48.6%
4940177 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 41.0 4.15e-01 71.8% 87.1%
3323984 4.1.1.38 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.59 40.0 3.01e-01 70.4% 37.3%
3924338 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.59 40.0 4.05e-01 70.4% 77.1%
None — 0.57 40.0 2.75e-01 76.1% 25.8%
4972712 218.4.1.1 ↗ a+b two layers › Enolase-N/ribosomal protein › Dhaf4260 N-terminal domain › Dhaf4260 N-terminal domain › DUF4213 0.56 40.0 3.47e-01 76.1% 92.2%
3218646 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 39.0 4.05e-01 73.2% 100.0%
4959884 4100.1.1.0 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.56 36.0 3.90e-01 70.4% 85.5%
1291928 2.1.1.78 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PCB_OB 0.55 39.0 3.39e-01 73.2% 90.6%
2546576 3740.1.1.1 ↗ alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_N,FrhB_FdhB_C 0.55 38.0 2.55e-01 73.2% 73.2%
3955471 2003.1.2.58 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, Pyr_redox_2 0.54 37.0 2.30e-01 70.4% 31.4%
3254315 4.1.1.38 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.54 40.0 3.17e-01 81.7% 87.5%
391151 719.2.1.1 ↗ beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.54 37.0 3.33e-01 73.2% 87.6%
5023356 3740.1.1.4 ↗ alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.53 37.0 2.39e-01 73.2% 62.5%
4356530 4237.1.1.1 ↗ beta barrels › FomD-like › FomD-like › FomD-like › DUF402 0.53 44.0 3.40e-01 98.6% 68.1%
3246494 292.2.1.1 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.52 38.0 2.70e-01 81.7% 84.5%
3965099 241.2.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.51 43.0 3.87e-01 98.6% 97.1%
3523979 604.12.1.118 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › DUF4537 0.51 40.0 4.30e-01 88.7% 100.0%
3497972 1021.1.1.0 ↗ a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases 0.50 36.0 3.38e-01 74.6% 63.5%
D5 medium residues 208-304
PDB
Domain cluster: rep: LacPavin_0818_WC40_scaffold_15340_prodigal-single.1__X__X__00049__D137-204
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF24308.2 best DUF7487 43.0 6.50e-11 58.8% 25.0%
PF24308.2 DUF7487 48.9 1.00e-12 44.3% 19.6%