←Back to structures

zinc_finger_protein

Euk-Vir

Marseillevirus_marseillevirus

zinc_finger_protein__YP_003407127__Marseillevirus_marseillevirus__694581

Identity

Accession:: YP_003407127 ↗
Protein ID:: zinc_finger_protein
Kingdom:: euk

Quality

73.9 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Marseilleviridae› Marseillevirus› Marseillevirus_marseillevirus

TaxID: 694581

Cluster

View cluster (178 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 273-278_463-585

PDB

Domain cluster: rep: OQ622096.1__WGH28569.1__13VV501A_gene0073__00071__D542-667

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00271.38 best	Helicase_C	36.2	8.50e-09	89.9%	97.3%

D2 medium residues 1-75

PDB

Domain cluster: representative

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2xzmV01	1.10.60.20	Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Ribosomal protein S17	0.61	47.0	5.13e-01	82.7%	100.0%
4zdnA01	3.40.47.10	Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase	0.56	47.0	2.95e-01	100.0%	83.8%
3s2cA02	3.20.20.80	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases	0.55	39.0	2.55e-01	76.0%	24.3%
1iqcA01	1.10.760.10	Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain	0.54	44.0	3.62e-01	94.7%	87.0%
3sigA00	3.40.220.10	Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1	0.51	37.0	2.57e-01	77.3%	44.5%
1cjaA02	1.10.1070.11	Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain	0.51	44.0	3.42e-01	100.0%	75.7%
6lgqC01	3.30.565.10	Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain	0.50	38.0	3.24e-01	82.7%	95.4%

ECOD (11)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3700245	2004.1.1.23 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom	0.90	68.0	4.45e-01	97.3%	21.1%
3210494	2004.1.1.24 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom,Helicase_C	0.90	68.0	4.10e-01	97.3%	13.6%
3592265	2004.1.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases	0.90	70.0	4.55e-01	98.7%	21.4%
3709035	2004.1.1.23 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom	0.88	66.0	4.28e-01	98.7%	20.7%
3177562	2004.1.1.23 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom	0.88	68.0	4.39e-01	100.0%	20.0%
3683536	2004.1.1.23 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom	0.85	67.0	4.27e-01	98.7%	19.7%
3683743	2004.1.1.23 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom	0.84	69.0	4.33e-01	98.7%	19.4%
3277119	2004.1.1.23 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom	0.84	75.0	4.83e-01	96.0%	24.8%
4631097	2004.1.1.23 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom	0.83	69.0	4.45e-01	98.7%	21.6%
4013220	2004.1.1.23 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom	0.81	76.0	4.93e-01	100.0%	34.1%
4012190	2004.1.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases	0.77	72.0	4.62e-01	100.0%	33.0%

D3 medium residues 76-90_112-218

PDB

Domain cluster: rep: putative_helicase__YP_009238960__Brazilian_marseillevirus__1813599__D112-216

D4 medium residues 281-304_379-445

PDB

D5 medium residues 305-378

PDB

Domain cluster: rep: helicase__YP_009345212__Noumeavirus__1955558__D310-363